RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DSPPQ9NZW4 1301 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 TMED7-TICAM2A0A0A6YYA0 188 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 TMEM72A0PK05 275 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 OR5H1A6NKK0 313 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 SHISA9B4DS77 424 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 FAAHO00519 579 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 THBS1P07996 1170 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 KITP10721 976 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 HTR3AP46098 478 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 ANXA11P50995 505 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 MRPL2Q5T653 305 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 GLB1L3Q8NCI6 653 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 ZBTB18Q99592 522 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 TMEM181Q9P2C4 612 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 MALT1Q9UDY8 824 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 TRAPPC4Q9Y296 219 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 NOSIPQ9Y314 301 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 TMED7Q9Y3B3 224 aa16.57■□□□□ 0.24
CCDC88B-206ENST00000473405 ZC3H12DA2A288 527 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 ZNF208O43345 1280 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 RAD51DO75771 328 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 IMPDH2P12268 514 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 IDO1P14902 403 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 TACR3P29371 465 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 CDKN1AP38936 164 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC1A3P43003 542 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 POLR2HP52434 150 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC18A1P54219 525 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 KRTAP1-1Q07627 177 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 EPS8Q12929 822 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 TNK1Q13470 666 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC9B1Q4ZJI4 515 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 PDCD4Q53EL6 469 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 P2RY8Q86VZ1 359 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 PMM1Q92871 262 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 MUCL1Q96DR8 90 aa16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 MTHFD2LQ9H903 347 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-206ENST00000473405 A0A1W2PP18 115 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 CDHR4A6H8M9 788 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 CFAP73A6NFT4 308 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 RFXANKO14593 260 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 GPR171O14626 319 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC22A3O75751 556 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 CD8AP01732 235 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 IL6P05231 212 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 DBIP07108 87 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 ITGA5P08648 1049 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 NR2F1P10589 423 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 IL7RP16871 459 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 FOXG1P55316 489 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 OR2B6P58173 313 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 SSX8Q7RTT4 187 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 UBE2J2Q8N2K1 259 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 SDR39U1Q9NRG7 319 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 RLIMQ9NVW2 624 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 ASB6Q9NWX5 421 aa16.55■□□□□ 0.24
CCDC88B-206ENST00000473405 STAB1Q9NY15 2570 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 SVEP1Q4LDE5 3571 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 INAFM1C9JVW0 142 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 SLCO1B7G3V0H7 640 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 PDLIM1O00151 329 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ABCD4O14678 606 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 MRPL33O75394 65 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 KRT75O95678 551 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 IGHV4-39P01824 125 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ETFAP13804 333 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 PCSK6P29122 969 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 MAGEA8P43361 318 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 CDH11P55287 796 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 MAGOHP61326 146 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC35A1P78382 337 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 FAPQ12884 760 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 GNA13Q14344 377 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ETFDHQ16134 617 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 CLEC12BQ2HXU8 276 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 GTDC1Q4AE62 458 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ATG16L1Q676U5 607 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 NXNQ6DKJ4 435 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ZNF836Q6ZNA1 936 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 DTX2Q86UW9 622 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 OR9I1Q8NGQ6 314 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 GTPBP3Q969Y2 492 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 VPS33AQ96AX1 596 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 TLCD1Q96CP7 247 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 DDIT4LQ96D03 193 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 OR52B2Q96RD2 323 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 TRAF4Q9BUZ4 470 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ADAM19Q9H013 955 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 TAS2R16Q9NYV7 291 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 CISD1Q9NZ45 108 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 P2RX2Q9UBL9 471 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 FLVCR1Q9Y5Y0 555 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 SLC25A15Q9Y619 301 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 ABCA1O95477 2261 aa16.54■□□□□ 0.24
CCDC88B-206ENST00000473405 EIF1BO60739 113 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 TFPTP0C1Z6 253 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 ZCCHC18P0CG32 403 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 ACAA2P42765 397 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 MAP2K6P52564 334 aa16.53■□□□□ 0.24
CCDC88B-206ENST00000473405 SPOCK1Q08629 439 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms