RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NOSIPQ9Y314 301 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 FAM234BA2RU67 622 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 CFAP73A6NFT4 308 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 RAMP1O60894 148 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 GKN3PP0CG01 181 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 ZCCHC18P0CG32 403 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 UQCRBP14927 111 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 IGHV1-2P23083 117 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 PTH2RP49190 550 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 CRISP3P54108 245 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 LIN52Q52LA3 116 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 EPGNQ6UW88 154 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 ATG4DQ86TL0 474 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 CCDC103Q8IW40 242 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 UBE2J2Q8N2K1 259 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 PIGXQ8TBF5 258 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 LRRC8CQ8TDW0 803 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 TMEM171Q8WVE6 324 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 DDIT4LQ96D03 193 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 MDFIQ99750 246 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 ESRP2Q9H6T0 727 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 SLCO1B3Q9NPD5 702 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 CALML5Q9NZT1 146 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 TMEM181Q9P2C4 612 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF443Q9Y2A4 671 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 RNF115Q9Y4L5 304 aa13.9□□□□□ -0.18
CCDC88B-205ENST00000472524 IGKV3D-15A0A087WSY6 115 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 ZC3H12DA2A288 527 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF716A6NP11 495 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 POLR3GO15318 223 aaPredicted RBP13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 DNPH1O43598 174 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 CD3EP07766 207 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 FKBP2P26885 142 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC1A3P43003 542 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 MAGEA8P43361 318 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 CLK1P49759 484 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 STX1BP61266 288 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 PDK3Q15120 406 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 NCMAPQ5T1S8 102 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC2A7Q6PXP3 512 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF440Q8IYI8 595 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF611Q8N823 705 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC38A5Q8WUX1 472 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 PMM1Q92871 262 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 APH1AQ96BI3 265 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 TMEM19Q96HH6 336 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 C7orf26Q96N11 449 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 BDH2Q9BUT1 245 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 CACYBPQ9HB71 228 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 TCF7L2Q9NQB0 619 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 TLN2Q9Y4G6 2542 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 DSPPQ9NZW4 1301 aa13.89□□□□□ -0.19
CCDC88B-205ENST00000472524 JMJD1CQ15652 2540 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 CDHR4A6H8M9 788 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 TMEM247A6NEH6 219 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 FAAHO00519 579 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF208O43345 1280 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 TFPTP0C1Z6 253 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 IMPDH2P12268 514 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 GGT1P19440 569 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 COX5AP20674 150 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC35A1P78382 337 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 BSPH1Q075Z2 132 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 PPA1Q15181 289 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 TTMPQ5BVD1 217 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 CADM2Q8N3J6 435 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 KBTBD8Q8NFY9 601 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 DYDC1Q8WWB3 177 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 GTF2H4Q92759 462 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 NEUROG1Q92886 237 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 ATP6V1G3Q96LB4 118 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 USB1Q9BQ65 265 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 EBF4Q9BQW3 602 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 NAA11Q9BSU3 229 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 GSX2Q9BZM3 304 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 PAIP1Q9H074 479 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 CXorf56Q9H5V9 222 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 TRAPPC4Q9Y296 219 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 PCDHB14Q9Y5E9 798 aa13.88□□□□□ -0.19
CCDC88B-205ENST00000472524 INAFM1C9JVW0 142 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 NR5A2O00482 541 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 GPR171O14626 319 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 MRPL33O75394 65 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 RAD51DO75771 328 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 CNOT4O95628 575 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 NUDT7P0C024 238 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 CXCR1P25024 350 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 NTF4P34130 210 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 IDH3AP50213 366 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC16A1P53985 500 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 LARS2Q15031 903 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 RNF220Q5VTB9 566 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 FBXW9Q5XUX1 488 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 ADAM5Q6NVV9 412 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 SEZ6L2Q6UXD5 910 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 CASP12Q6UXS9 341 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 CLIP4Q8N3C7 705 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF433Q8N7K0 673 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 LILRB1Q8NHL6 650 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 IGFBPL1Q8WX77 278 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms