RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 TMED7Q9Y3B3 224 aa16.92■□□□□ 0.3
COL7A1-207ENST00000467985 DSPPQ9NZW4 1301 aa16.92■□□□□ 0.3
COL7A1-207ENST00000467985 A0A0G2JND7 137 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 CDHR4A6H8M9 788 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 GMNCA6NCL1 334 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 AP3D1O14617 1153 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 EIF1BO60739 113 aaKnown RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ADAM11O75078 769 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ETFAP13804 333 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 SEC24CP53992 1094 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 EPS8Q12929 822 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 LARS2Q15031 903 aaKnown RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 BHLHA15Q7RTS1 189 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 OR9I1Q8NGQ6 314 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 OR52P1PQ8NH57 321 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 SLC38A5Q8WUX1 472 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 VPS33AQ96AX1 596 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ARL5BQ96KC2 179 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ZNF317Q96PQ6 595 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ARMC7Q9H6L4 198 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ESRP2Q9H6T0 727 aaKnown RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 OSGIN1Q9UJX0 560 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 ZNF232Q9UNY5 417 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 RAI1Q7Z5J4 1906 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-207ENST00000467985 DSCAMO60469 2012 aa16.91■□□□□ 0.3
COL7A1-207ENST00000467985 A0A0G2JPF8 293 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 HNRNPCL2B2RXH8 293 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 HNRNPCL3B7ZW38 293 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 HNRNPCL1O60812 293 aaKnown RBP16.9■□□□□ 0.3
COL7A1-207ENST00000467985 BCHEP06276 602 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 THBS1P07996 1170 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 HNRNPCL4P0DMR1 293 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 TACR3P29371 465 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 SLC16A1P53985 500 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 COPZ1P61923 177 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 SLC35A1P78382 337 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 IRX1P78414 480 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-207ENST00000467985 SF3A3Q12874 501 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL7A1-207ENST00000467985 TSC22D1Q15714 1073 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 TAB1Q15750 504 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 MAPK11Q15759 364 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 RNF220Q5VTB9 566 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 ALKBH2Q6NS38 261 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 PRSS57Q6UWY2 283 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 GTF2H4Q92759 462 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 ZNF775Q96BV0 537 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-207ENST00000467985 OR11A1Q9GZK7 315 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 PRSS50Q9UI38 385 aa16.9■□□□□ 0.3
COL7A1-207ENST00000467985 NOSIPQ9Y314 301 aaKnown RBP16.9■□□□□ 0.3
COL7A1-207ENST00000467985 ZANQ9Y493 2812 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF716A6NP11 495 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 HS3ST1O14792 307 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 CCNA2P20248 432 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 OR2B6P58173 313 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 FADDQ13158 208 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 CAPRIN1Q14444 709 aaKnown RBP16.89■□□□□ 0.29
COL7A1-207ENST00000467985 Q5PR19 223 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 PRAMEF8Q5VWM4 474 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 PRAMEF7Q5VXH5 474 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 ADAM5Q6NVV9 412 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 BIVMQ86UB2 503 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 P2RY8Q86VZ1 359 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 KRTAP1-3Q8IUG1 177 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF611Q8N823 705 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 APH1AQ96BI3 265 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 AURKBQ96GD4 344 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-207ENST00000467985 C18orf12Q96KH6 178 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 NAA11Q9BSU3 229 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-207ENST00000467985 CCDC28BQ9BUN5 200 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 ADAM19Q9H013 955 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 PAIP1Q9H074 479 aaKnown RBP16.89■□□□□ 0.29
COL7A1-207ENST00000467985 TMEM45AQ9NWC5 275 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 IFT52Q9Y366 437 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 RNF115Q9Y4L5 304 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 PCDHB14Q9Y5E9 798 aa16.89■□□□□ 0.29
COL7A1-207ENST00000467985 A0A096LPI6 279 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 LYZL6O75951 148 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 CD3EP07766 207 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 COX5AP20674 150 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 CXCR1P25024 350 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 IDH3AP50213 366 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 H3F3AP84243 136 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 RGNQ15493 299 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 NCMAPQ5T1S8 102 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 FBXW9Q5XUX1 488 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF836Q6ZNA1 936 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 VRK2Q86Y07 508 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 TMEM171Q8WVE6 324 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 MUCL1Q96DR8 90 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 TMEM19Q96HH6 336 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 GSX2Q9BZM3 304 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 RABEP2Q9H5N1 569 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 CXorf56Q9H5V9 222 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 A4GALTQ9NPC4 353 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 RLIMQ9NVW2 624 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 PARPBPQ9NWS1 579 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 ZNF443Q9Y2A4 671 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-207ENST00000467985 PRR14LQ5THK1 2151 aa16.88■□□□□ 0.29
COL7A1-207ENST00000467985 TMEM72A0PK05 275 aa16.87■□□□□ 0.29
COL7A1-207ENST00000467985 CLIC1O00299 241 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 224.1 ms