RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SERPINA11Q86U17 422 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 AMIGO3Q86WK7 504 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TCEAL8Q8IYN2 117 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 KRTCAP2Q8N6L1 136 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 OR13C4Q8NGS5 318 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 ST6GAL2Q96JF0 529 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 CMKLR1Q99788 373 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 CHRDQ9H2X0 955 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 PCDHA9Q9Y5H5 950 aa12.45□□□□□ -0.42
USP40-208ENST00000450966 TRDV1A0A1B0GX56 115 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CLEC3AO75596 197 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 LGI1O95970 557 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ZNF250P15622 560 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 HSD11B1P28845 292 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 RPS13P62277 151 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 KCNC3Q14003 757 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 LETMD1Q6P1Q0 360 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 TMEM156Q8N614 296 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 WDR20Q8TBZ3 569 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 POM121Q96HA1 1249 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 WDR92Q96MX6 357 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 TAF9BQ9HBM6 251 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 TM7SF3Q9NS93 570 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 DIMT1Q9UNQ2 313 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 BLOC1S5-TXNDC5H3BN57 136 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 TMEM189-UBE2V1I3L0A0 370 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 SLC31A2O15432 143 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 HSD17B7P56937 341 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 HIST1H3AP68431 136 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ACY1Q03154 408 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CPZQ66K79 652 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 PLBD1Q6P4A8 553 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 FAM86B1Q8N7N1 296 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 RELL2Q8NC24 303 aaPredicted RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 RYDENQ9NUL5 291 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 A6NIN4 97 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 NPIPA2E9PIF3 369 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 NPIPA5E9PKD4 350 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 NPIPA3F8WFD2 350 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CIDEAO60543 219 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 RAD51DO75771 328 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ARAFP10398 606 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 F2RL1P55085 397 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 RPP30P78346 268 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 MBTPS1Q14703 1052 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 AARDQ4LEZ3 155 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CATSPEREQ5SY80 951 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 NOXRED1Q6NXP6 359 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ETV3LQ6ZN32 361 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 TMEM135Q86UB9 458 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 PTRH1Q86Y79 214 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 BPIFB2Q8N4F0 458 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 OR9Q2Q8NGE9 314 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 SLC35F5Q8WV83 523 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 SLC25A21Q9BQT8 299 aaPredicted RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 TTTY10Q9BZA0 68 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CENPMQ9NSP4 180 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 BABAM2Q9NXR7 383 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 NPIPA1Q9UND3 350 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 FBXO7Q9Y3I1 522 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 MYH10P35580 1976 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 SCN11AQ9UI33 1791 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 IGKV6D-21A0A0A0MT36 114 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CLCNKAP51800 687 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ISL1P61371 349 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CDK5Q00535 292 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ZNF91Q05481 1191 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 CEBPEQ15744 281 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 ZNF805Q5CZA5 627 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 PNPLA2Q96AD5 504 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 INPP5KQ9BT40 448 aa12.44□□□□□ -0.42
USP40-208ENST00000450966 STRAPQ9Y3F4 350 aaKnown RBP12.44□□□□□ -0.42
USP40-208ENST00000450966 A0A1B0GUH1 482 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 DIRAS3O95661 229 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 F7P08709 466 aaPredicted RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 PAFAH1B3Q15102 231 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 RAB35Q15286 201 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 HENMT1Q5T8I9 393 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 CCDC190Q86UF4 302 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 SIGLECL1Q8N7X8 197 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 BVESQ8NE79 360 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 DYRK2Q92630 601 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 OPALINQ96PE5 141 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ARFGEF2Q9Y6D5 1785 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 TPPP2P59282 170 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ELAVL3Q14576 367 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 ZNF273Q14593 569 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 FRMPD2BQ6IN97 320 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 LARP4Q71RC2 724 aaKnown RBP eCLIP12.43□□□□□ -0.42
USP40-208ENST00000450966 NAGSQ8N159 534 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 MFSD4AQ8N468 514 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 OR5AK2Q8NH90 309 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 BPIFA2Q96DR5 249 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 PCED1AQ9H1Q7 454 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 HS3ST4Q9Y661 456 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 GJE1A6NN92 205 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 AQP7O14520 342 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ERI3O43414 337 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 STK17BO94768 372 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 RABGGTBP53611 331 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms