RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 RNF220Q5VTB9 566 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 PRAMEF8Q5VWM4 474 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 PRAMEF7Q5VXH5 474 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 SLC2A7Q6PXP3 512 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 SEZ6L2Q6UXD5 910 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 ZNF836Q6ZNA1 936 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 ZNF704Q6ZNC4 412 aaPredicted RBP17.17■□□□□ 0.34
USP40-207ENST00000450940 VRK2Q86Y07 508 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 ZNF775Q96BV0 537 aaPredicted RBP17.17■□□□□ 0.34
USP40-207ENST00000450940 VIPAS39Q9H9C1 493 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 BCL2L10Q9HD36 194 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 RLIMQ9NVW2 624 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 CHST2Q9Y4C5 530 aa17.17■□□□□ 0.34
USP40-207ENST00000450940 TMEM72A0PK05 275 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 CLIC1O00299 241 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 GPR171O14626 319 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 BCHEP06276 602 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 COX5AP20674 150 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 STX1BP61266 288 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 FADDQ13158 208 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 LRIF1Q5T3J3 769 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 ADAM5Q6NVV9 412 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 HDXQ7Z353 690 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 PIGXQ8TBF5 258 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 STON2Q8WXE9 905 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 DDIT4LQ96D03 193 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 TMEM19Q96HH6 336 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 POTEKPQ9BYX7 375 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 RAD21L1Q9H4I0 556 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 A4GALTQ9NPC4 353 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 ZNF443Q9Y2A4 671 aaPredicted RBP17.16■□□□□ 0.34
USP40-207ENST00000450940 ZFHX3Q15911 3703 aa17.16■□□□□ 0.34
USP40-207ENST00000450940 HMGB1P1B2RPK0 211 aaPredicted RBP17.15■□□□□ 0.34
USP40-207ENST00000450940 ARHGEF9O43307 516 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 EIF1BO60739 113 aaKnown RBP17.15■□□□□ 0.34
USP40-207ENST00000450940 SMPD2O60906 423 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 PGM3O95394 542 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 PLAUP00749 431 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 IMPDH2P12268 514 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 CCNA2P20248 432 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 NTF4P34130 210 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 AQP5P55064 265 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 SLC35A1P78382 337 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 LARS2Q15031 903 aaKnown RBP17.15■□□□□ 0.34
USP40-207ENST00000450940 NCMAPQ5T1S8 102 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 PRSS57Q6UWY2 283 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 BHLHA15Q7RTS1 189 aaPredicted RBP17.15■□□□□ 0.34
USP40-207ENST00000450940 CLIP4Q8N3C7 705 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 CCL19Q99731 98 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 SPATA9Q9BWV2 254 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 NGBQ9NPG2 151 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 SLC25A37Q9NYZ2 338 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 ZNF232Q9UNY5 417 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 IFT52Q9Y366 437 aa17.15■□□□□ 0.34
USP40-207ENST00000450940 ZC3H12DA2A288 527 aaKnown RBP17.14■□□□□ 0.33
USP40-207ENST00000450940 TMEM247A6NEH6 219 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 RAMP1O60894 148 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 TMCC2O75069 709 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 NUDT7P0C024 238 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 GKN3PP0CG01 181 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 PAX1P15863 534 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 H2AFXP16104 143 aaPredicted RBP17.14■□□□□ 0.33
USP40-207ENST00000450940 IGHV1-2P23083 117 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 ATP4BP51164 291 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 OR2B6P58173 313 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 RPS26P11Q5JNZ5 115 aaPredicted RBP17.14■□□□□ 0.33
USP40-207ENST00000450940 FBXW9Q5XUX1 488 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 WBP2NLQ6ICG8 309 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 SSX8Q7RTT4 187 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 P2RY8Q86VZ1 359 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 CCDC103Q8IW40 242 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 MSRB3Q8IXL7 192 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 ZNF100Q8IYN0 542 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 ZNF433Q8N7K0 673 aaPredicted RBP17.14■□□□□ 0.33
USP40-207ENST00000450940 GOLGA6L1Q8N7Z2 621 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 ZNF611Q8N823 705 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 SLC35B4Q969S0 331 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 SPDL1Q96EA4 605 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 NOSIPQ9Y314 301 aaKnown RBP17.14■□□□□ 0.33
USP40-207ENST00000450940 CADP27708 2225 aa17.14■□□□□ 0.33
USP40-207ENST00000450940 TRBV5-3A0A0A0MS03 114 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 HS3ST1O14792 307 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 LYZL6O75951 148 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 PAQR6Q6TCH4 344 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 LILRB1Q8NHL6 650 aaPredicted RBP17.13■□□□□ 0.33
USP40-207ENST00000450940 DYDC1Q8WWB3 177 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 CKAP2Q8WWK9 683 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 APH1AQ96BI3 265 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 NAA11Q9BSU3 229 aaPredicted RBP17.13■□□□□ 0.33
USP40-207ENST00000450940 ARMC7Q9H6L4 198 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 INTS9Q9NV88 658 aaKnown RBP17.13■□□□□ 0.33
USP40-207ENST00000450940 CCDC167Q9P0B6 97 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 SLAMF8Q9P0V8 285 aa17.13■□□□□ 0.33
USP40-207ENST00000450940 PRG2P13727 222 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 CXCR1P25024 350 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 SLC17A1Q14916 467 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 PAGE3Q5JUK9 113 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 TIMM23BQ5SRD1 257 aa17.12■□□□□ 0.33
USP40-207ENST00000450940 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.12■□□□□ 0.33
USP40-207ENST00000450940 BBS10Q8TAM1 723 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms