RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 H0YGG7 62 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 H7C1C5 153 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 FGF17O60258 216 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 DNAJB6O75190 326 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 UBL3O95164 117 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ATF1P18846 271 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 POU3F3P20264 500 aaPredicted RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 FAUP35544 74 aaKnown RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 PSMD4P55036 377 aaKnown RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 ARF3P61204 181 aaPredicted RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 LCN6P62502 163 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 FAM209AQ5JX71 171 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ZNF627Q7L945 461 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 IL17RCQ8NAC3 791 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 SYNPRQ8TBG9 265 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 AGFG1P52594 562 aaKnown RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 BTG1P62324 171 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 PRSS41Q7RTY9 318 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 TOR1AIP2Q8NFQ8 470 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 TIMM29Q9BSF4 260 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 HDAC8Q9BY41 377 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 TRIM2Q9C040 744 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ANKRD19PQ9H560 264 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 Q9N2J8 555 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 CMC2Q9NRP2 79 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 KLHL9Q9P2J3 617 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 MRPS33Q9Y291 106 aaKnown RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 SCN5AQ14524 2016 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 PRSS38A1L453 326 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 SIX6O95475 246 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 CEACAM5P06731 702 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 RPS27P42677 84 aaKnown RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 VASPP50552 380 aaPredicted RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 MLC1Q15049 377 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 LRRC37A5PQ49AS3 106 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 PXDC1Q5TGL8 231 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 FRMD1Q8N878 549 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 DNAAF1Q8NEP3 725 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 OR9A4Q8NGU2 314 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 VOPP1Q96AW1 172 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 RASD2Q96D21 266 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ZFYVE21Q9BQ24 234 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 IL23AQ9NPF7 189 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ACTR10Q9NZ32 417 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 COPZ2Q9P299 210 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 F13BP05160 661 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 NAT2P11245 290 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 NID1P14543 1247 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 HIST1H1CP16403 213 aaKnown RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 VEGFBP49765 207 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 GMFBP60983 142 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ACTA2P62736 377 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ACTG2P63267 376 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 CAMK2BQ13554 666 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 RNLSQ5VYX0 342 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 OR52I2Q8NH67 350 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 OR56B4Q8NH76 319 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 MOSPD2Q8NHP6 518 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ADAMTS14Q8WXS8 1223 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 RIT1Q92963 219 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 PTP4A1Q93096 173 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 MED30Q96HR3 178 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 COMMD4Q9H0A8 199 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 NOX3Q9HBY0 568 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.97□□□□□ -0.65
MSH6-204ENST00000445503 POT1Q9NUX5 634 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 LAMP5Q9UJQ1 280 aa10.97□□□□□ -0.65
MSH6-204ENST00000445503 A0A0A6YYC8 382 aaPredicted RBP10.96□□□□□ -0.65
MSH6-204ENST00000445503 IDSB3KWA1 339 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 I3L1I5 382 aaPredicted RBP10.96□□□□□ -0.65
MSH6-204ENST00000445503 TACSTD2P09758 323 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 TOR2AQ5JU69 321 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 ALKAL2Q6UX46 152 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 GALNT11Q8NCW6 608 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 ZDHHC1Q8WTX9 485 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 TSSK2Q96PF2 358 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 ACTR6Q9GZN1 396 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 RXFP3Q9NSD7 469 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 C14orf105Q9NVL8 296 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 TMEM72A0PK05 275 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 B4DGG1 531 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 CLDN4O14493 209 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 CREBL2O60519 120 aaPredicted RBP10.96□□□□□ -0.65
MSH6-204ENST00000445503 GPR75O95800 540 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 UCHL1P09936 223 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 GTF2F2P13984 249 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 SLC6A1P30531 599 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 STARP49675 285 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 SCGB2B2Q4G0G5 96 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 HLA-DQA1Q5Y7H0 255 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 COX14Q96I36 57 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 DGAT2Q96PD7 388 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 SEMA4CQ9C0C4 833 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 EXO5Q9H790 373 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 PNO1Q9NRX1 252 aaKnown RBP10.96□□□□□ -0.65
MSH6-204ENST00000445503 DAPP1Q9UN19 280 aa10.96□□□□□ -0.65
MSH6-204ENST00000445503 CXorf51AA0A1B0GTR3 108 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 XKRYO14609 159 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 RBBP9O75884 186 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 PLGP00747 810 aaPredicted RBP10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms