RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 UCHL1P09936 223 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 CLUP10909 449 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 EPXP11678 715 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 NTSR1P30989 418 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 GDI2P50395 445 aaKnown RBP10.41□□□□□ -0.74
USP4-205ENST00000431357 ARF3P61204 181 aaPredicted RBP10.41□□□□□ -0.74
USP4-205ENST00000431357 SHEQ5VZ18 495 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 FCRLBQ6BAA4 426 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 ZNF550Q7Z398 422 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 SLITRK4Q8IW52 837 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 CYB561A3Q8NBI2 242 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 CNOT9Q92600 299 aaKnown RBP10.41□□□□□ -0.74
USP4-205ENST00000431357 CNN2Q99439 309 aaKnown RBP10.41□□□□□ -0.74
USP4-205ENST00000431357 CACNG6Q9BXT2 260 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 IFT22Q9H7X7 185 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 MCCC2Q9HCC0 563 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 FLRT3Q9NZU0 649 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 AKAP7Q9P0M2 348 aaPredicted RBP10.41□□□□□ -0.74
USP4-205ENST00000431357 ICAM5Q9UMF0 924 aa10.41□□□□□ -0.74
USP4-205ENST00000431357 TRAV6A0A075B6T7 132 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 LOC105369274A0A096LPK9 316 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 A0A1W2PRG6 482 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 FAM221BA6H8Z2 402 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 A6NCN8 305 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 POM121BA6NF01 834 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ZNF860A6NHJ4 632 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 K7EQS6 105 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 TNFRSF10CO14798 259 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ZNF749O43361 778 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SLC35E2P0CK97 266 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 GDI1P31150 447 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SRP9P49458 86 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 SEC13P55735 322 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SIRPAP78324 504 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 EXOSC7Q15024 291 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 ZNHIT3Q15649 155 aaPredicted RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 SLC35D3Q5M8T2 416 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 RPTNQ6XPR3 784 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 LINC00114Q6XXX2 140 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 BTN2A1Q7KYR7 527 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 HDDC2Q7Z4H3 204 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SIAH3Q8IW03 269 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR4N4Q8N0Y3 316 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 CA13Q8N1Q1 262 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 DTX3Q8N9I9 347 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 FAM98AQ8NCA5 519 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 OR52E2Q8NGJ4 325 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR5H6Q8NGV6 325 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OMA1Q96E52 524 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PEX11GQ96HA9 241 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ERMAPQ96PL5 475 aaPredicted RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 GABRG3Q99928 467 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 LMF2Q9BU23 707 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 DOCK9Q9BZ29 2069 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 TMEM168Q9H0V1 697 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 MTIF3Q9H2K0 278 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 NRIP3Q9NQ35 241 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 TMEM74BQ9NUR3 256 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 UCKL1Q9NWZ5 548 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 USP36Q9P275 1121 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 CHRNA9Q9UGM1 479 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ZNF222Q9UK12 451 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 A0A1B0GVC2 190 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR6C74A6NCV1 312 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 A6NIN4 97 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 C2orf74A8MZ97 194 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ZNF879B4DU55 563 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PDCD5O14737 125 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 GALR3O60755 368 aaPredicted RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 CT62P0C5K7 136 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 H2AFB2P0C5Z0 115 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 TYRP1P17643 537 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ATF1P18846 271 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ACAA2P42765 397 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 RAB38P57729 211 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PPP2CBP62714 309 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PPP2CAP67775 309 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PLAURQ03405 335 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 HSF2Q03933 536 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 CRYZQ08257 329 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 IKZF1Q13422 519 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PON3Q15166 354 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 TP53I3Q53FA7 332 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ALG10BQ5I7T1 473 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 UBE2NLQ5JXB2 153 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ZBTB37Q5TC79 503 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 ULK3Q6PHR2 472 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 UNQ9370/PRO34162Q6UXP9 181 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 RNF44Q7L0R7 432 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SSX6Q7RTT6 188 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 RD3Q7Z3Z2 195 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 FGD2Q7Z6J4 655 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 SLC35F2Q8IXU6 374 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR11H7Q8NGC8 314 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR56B4Q8NH76 319 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 OR10G6Q8NH81 332 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 BAHD1Q8TBE0 780 aaPredicted RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 HSD17B8Q92506 261 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 HGDQ93099 445 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 PELI1Q96FA3 418 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms