RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 COL6A6A6NMZ7 2263 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 UBR5O95071 2799 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 PCNX2A6NKB5 2137 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ADAMTS9Q9P2N4 1935 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 A0A087WZ39 114 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 A0A1B0GTQ1 180 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TRIM49BA6NDI0 452 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ZSCAN5BA6NJL1 495 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 A8MXQ7 604 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 EVPLLA8MZ36 301 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ACOT8O14734 319 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 FPGTO14772 594 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ACOX3O15254 700 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SLC37A4O43826 429 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 VPS26AO75436 327 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SPAG6O75602 509 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TRMUO75648 421 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SLITRK3O94933 977 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SNAPINO95295 136 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 POP4O95707 220 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SNRPAP09012 282 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 T-ENOLP0DO92 83 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 RRASP10301 218 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 MBL2P11226 248 aaPredicted RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 B4GALT1P15291 398 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 DPP4P27487 766 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 GJB2P29033 226 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 PRDX6P30041 224 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 HLA-FP30511 346 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TAF6P49848 677 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 HNMTP50135 292 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ARHGDIBP52566 201 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 AP2S1P53680 142 aaPredicted RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 IST1P53990 364 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 LINC00205P59089 165 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 EXOSC7Q15024 291 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 KCNJ8Q15842 424 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 DUSP5Q16690 384 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF829Q3KNS6 432 aaPredicted RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CFAP221Q4G0U5 840 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 FAM106AQ4KMX7 169 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CCDC58Q4VC31 144 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CLVS2Q5SYC1 327 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 OR4C11Q6IEV9 310 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SPSB3Q6PJ21 355 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SLC25A47Q6Q0C1 308 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ALKAL1Q6UXT8 129 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM64Q6YI46 380 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 LRRC74BQ6ZQY2 392 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 AKAP14Q86UN6 197 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 MARCH9Q86YJ5 346 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ZC3H3Q8IXZ2 948 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 POC1AQ8NBT0 407 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 OR52K2Q8NGK3 314 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 OR4L1Q8NH43 312 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 GRPEL2Q8TAA5 225 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SELENOMQ8WWX9 145 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 NELFBQ8WX92 580 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 FCGR1BQ92637 280 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 C18orf25Q96B23 403 aaPredicted RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TLCD1Q96CP7 247 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 OMA1Q96E52 524 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 C16orf58Q96GQ5 468 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 SENP8Q96LD8 212 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 DOCK7Q96N67 2140 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 VPS35Q96QK1 796 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CCNL2Q96S94 520 aaPredicted RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ZPBPQ9BS86 351 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 FUNDC2Q9BWH2 189 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF416Q9BWM5 594 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CALN1Q9BXU9 219 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 MRPS26Q9BYN8 205 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 POLR1EQ9GZS1 481 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ADNPQ9H2P0 1102 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 MRPL39Q9NYK5 338 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 LAMP5Q9UJQ1 280 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 LSM7Q9UK45 103 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 AP3M1Q9Y2T2 418 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ARL2BPQ9Y2Y0 163 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 UTP11Q9Y3A2 253 aaKnown RBP3.54□□□□□ -1.84
HMGB3-203ENST00000430118 MFHAS1Q9Y4C4 1052 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CPQQ9Y646 472 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CACNG2Q9Y698 323 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 CSNK1G3Q9Y6M4 447 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 USH1CQ9Y6N9 552 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 TEX15Q9BXT5 2789 aa3.54□□□□□ -1.84
HMGB3-203ENST00000430118 ANKRD17O75179 2603 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 hCG_38984A0A1B0GV85 526 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 YJEFN3A6XGL0 299 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SNURFLB1AK76 121 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 GPR89AB7ZAQ6 455 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 SGK494L7N484 410 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 LGALS8O00214 317 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 PDXKO00764 312 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 CYB561D2O14569 222 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 MAPK13O15264 365 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 MAGEB3O15480 346 aa3.53□□□□□ -1.84
HMGB3-203ENST00000430118 GATCO43716 136 aaKnown RBP3.53□□□□□ -1.84
HMGB3-203ENST00000430118 TBX19O60806 448 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms