RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PHF11Q9UIL8 331 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 LSM2Q9Y333 95 aaKnown RBP7.7□□□□□ -1.18
CD44-208ENST00000428726 COL12A1Q99715 3063 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 IGHV1OR15-9A0A0B4J2B8 117 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 URADA6NGE7 173 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 SNTNA6NMZ2 147 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 PATE3B3GLJ2 98 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 GTPBP1O00178 669 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 TPD52L2O43399 206 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 AGR2O95994 175 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 CD38P28907 300 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 RPS5P46782 204 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 DHPSP49366 369 aaPredicted RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 WNT4P56705 351 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 FOXK2Q01167 660 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 TSPAN31Q12999 210 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 NSDHLQ15738 373 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 CCDC58Q4VC31 144 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 QSOX2Q6ZRP7 698 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 MARCH3Q86UD3 253 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ZNF619Q8N2I2 560 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ZNF563Q8TA94 476 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ITPKCQ96DU7 683 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 Q96M85 177 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 MOGAT1Q96PD6 335 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 KATNB1Q9BVA0 655 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 OR11A1Q9GZK7 315 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ANKRD19PQ9H560 264 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 RPRD1BQ9NQG5 326 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 NKIRAS2Q9NYR9 191 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 RPS6KB2Q9UBS0 482 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 IRGMA1A4Y4 181 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 CDHR4A6H8M9 788 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ACOD1A6NK06 481 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 NOTOA8MTQ0 251 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 TNFRSF10CO14798 259 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 PRODHO43272 600 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 HCRTR2O43614 444 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ENDOUP21128 410 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 CD1CP29017 333 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 PRKAR1BP31321 381 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 BMP8BP34820 402 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 RABIFP47224 123 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 MGAT2Q10469 447 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 SLC25A35Q3KQZ1 300 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ZNF57Q68EA5 555 aaPredicted RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 BMP8AQ7Z5Y6 402 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 RANBP3LQ86VV4 465 aaPredicted RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 RAB43Q86YS6 212 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 DNAAF1Q8NEP3 725 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 OR4D9Q8NGE8 314 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 OR52L1Q8NGH7 329 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 GPBAR1Q8TDU6 330 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ZNF775Q96BV0 537 aaPredicted RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 TM4SF19Q96DZ7 209 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 ALG8Q9BVK2 526 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 MIXL1Q9H2W2 232 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 PIGUQ9H490 435 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 NTMQ9P121 344 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 GNG8Q9UK08 70 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 DIMT1Q9UNQ2 313 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 C19orf53Q9UNZ5 99 aaPredicted RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 VDAC3Q9Y277 283 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 AK6Q9Y3D8 172 aaKnown RBP7.69□□□□□ -1.18
CD44-208ENST00000428726 PIEZO2Q9H5I5 2752 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 DNAJC13O75165 2243 aa7.69□□□□□ -1.18
CD44-208ENST00000428726 PRR23D1E9PI22 279 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 DCTN6O00399 190 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 TNFSF14O43557 240 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 HCN1O60741 890 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 SCO1O75880 301 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 PRR23D2P0DMB1 279 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 ZNF10P21506 573 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 EEF1A1P68104 462 aaKnown RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 EFNB1P98172 346 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 MLLT11Q13015 90 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 KLHL22Q53GT1 634 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 HEPHL1Q6MZM0 1159 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 LRRC69Q6ZNQ3 347 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 SLC35D2Q76EJ3 337 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 OR4C6Q8NH72 309 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 NECAB3Q96P71 396 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 IRF2BPLQ9H1B7 796 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 OR10A5Q9H207 317 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 KCNK15Q9H427 330 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 SP140LQ9H930 580 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 TMEM27Q9HBJ8 222 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 PRDM9Q9NQV7 894 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 CRNNQ9UBG3 495 aaPredicted RBP7.68□□□□□ -1.18
CD44-208ENST00000428726 MED31Q9Y3C7 131 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 RNF215Q9Y6U7 377 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 FREM3P0C091 2139 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 NBASA2RRP1 2371 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 A0A0B4J293 547 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 TRAPPC13A5PLN9 417 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 CCDC182A6NF36 153 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 GABRPO00591 440 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 MBTPS2O43462 519 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 HLA-DQA2P01906 255 aa7.68□□□□□ -1.18
CD44-208ENST00000428726 SMIM10L1P0DMW3 83 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms