RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ST13P4Q8IZP2 240 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 RBMXL3Q8N7X1 1067 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 APCDD1LQ8NCL9 501 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR5L2Q8NGL0 311 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 RAB3IL1Q8TBN0 382 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 C16orf78Q8WTQ4 265 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PTPMT1Q8WUK0 201 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SENP5Q96HI0 755 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ATP6V1G3Q96LB4 118 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PPP3R2Q96LZ3 170 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 DGAT2Q96PD7 388 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ILKAPQ9H0C8 392 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TRIM45Q9H8W5 580 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 LRTM1Q9HBL6 345 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 GIMAP4Q9NUV9 329 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 C1orf109Q9NX04 203 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TAS2R7Q9NYW3 318 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CES1P1Q9UKY3 287 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 DLGAP4Q9Y2H0 992 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 YARS2Q9Y2Z4 477 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TMED5Q9Y3A6 229 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CCL27Q9Y4X3 112 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 DNAJC15Q9Y5T4 150 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TRBV11-1A0A0K0K1C0 115 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 GNG14A0A1W2PPG7 69 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR5H15A6NDH6 313 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 GLOD5A6NK44 160 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR6C76A6NM76 312 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 C17orf105B2RV13 164 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 USP17L23D6RBM5 183 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 KLF11O14901 512 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PCDH7O60245 1069 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR10H2O60403 315 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TBX19O60806 448 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SORBS2O94875 1100 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HSPA4LO95757 839 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 WDPCPO95876 746 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 GBAP04062 536 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CHRNGP07510 517 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 IL3P08700 152 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 LINC00032P0C843 101 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CPMP14384 443 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PORP16435 677 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 DDX5P17844 614 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 BGNP21810 368 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HOXD3P31249 432 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SLC1A6P48664 564 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TNFSF10P50591 281 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HLCSP50747 726 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 RPL14P50914 215 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 DSCR9P59020 149 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ARG2P78540 354 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF763Q0D2J5 394 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 C2orf80Q0P641 193 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FUT7Q11130 342 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 KIAA0040Q15053 153 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CHI3L2Q15782 390 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NADK2Q4G0N4 442 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ESCO2Q56NI9 601 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 C6orf163Q5TEZ5 329 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CLEC6AQ6EIG7 209 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FAM71E1Q6IPT2 247 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NOXRED1Q6NXP6 359 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HSDL2Q6YN16 418 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZCCHC23Q6ZST2 131 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 IKBIPQ70UQ0 350 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CRLF3Q8IUI8 442 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 GPALPP1Q8IXQ4 340 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 LRRC34Q8IZ02 419 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NATD1Q8N6N6 113 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR7G1Q8NGA0 311 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NUBPLQ8TB37 319 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TMEM163Q8TC26 289 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF721Q8TF20 911 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TWIST2Q8WVJ9 160 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 RIT1Q92963 219 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SNAPC3Q92966 411 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NCLNQ969V3 563 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PPWD1Q96BP3 646 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ERP27Q96DN0 273 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FCRL1Q96LA6 429 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HBEGFQ99075 208 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SH3GL2Q99962 352 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PAIP2Q9BPZ3 127 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 UTP23Q9BRU9 249 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR8D2Q9GZM6 311 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TUBB1Q9H4B7 451 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CXorf21Q9HAI6 301 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZBTB20Q9HC78 741 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 MYNNQ9NPC7 610 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TEX10Q9NXF1 929 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CISD1Q9NZ45 108 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 COPS7AQ9UBW8 275 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZDHHC2Q9UIJ5 367 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HAO1Q9UJM8 370 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CFL2Q9Y281 166 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF780BQ9Y6R6 833 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FER1L5A0AVI2 2057 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SCN3AQ9NY46 2000 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 WASHC1A8K0Z3 465 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms