RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MYOM1P52179 1685 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GPR171O14626 319 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TOXO94900 526 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CHRNB1P11230 501 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 PRKACGP22612 351 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 PROZP22891 400 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 RAB5CP51148 216 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF133P52736 654 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 WNT4P56705 351 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GPLD1P80108 840 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC14A1Q13336 389 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 VASNQ6EMK4 673 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 OR52R1Q8NGF1 315 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 OR56B4Q8NH76 319 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 APH1AQ96BI3 265 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 RTP4Q96DX8 246 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 IL17FQ96PD4 163 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ADAM19Q9H013 955 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 RPS10P5Q9NQ39 176 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 PLRG1O43660 514 aaKnown RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SUSD5O60279 629 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GPR32O75388 356 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 AHRP35869 848 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 RNF4P78317 190 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GPR18Q14330 331 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 HNRNPA1L2Q32P51 320 aaKnown RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 HBMQ6B0K9 141 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GPR155Q7Z3F1 870 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ADGRG3Q86Y34 549 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC35G3Q8N808 338 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 C15orf54Q8N8G6 183 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CACNG6Q9BXT2 260 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 DMRT3Q9NQL9 472 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ENPP5Q9UJA9 477 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 POLR2AP24928 1970 aaKnown RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SHPRHQ149N8 1683 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TOPAZ1Q8N9V7 1692 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TNFSF12O43508 249 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ELK4P28324 431 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GGT5P36269 586 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 LTC4SQ16873 150 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 MSS51Q4VC12 460 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 PAGE3Q5JUK9 113 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 HACD4Q5VWC8 232 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 NLRC3Q7RTR2 1065 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 AAED1Q7RTV5 226 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ZC3HAV1LQ96H79 300 aaKnown RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SGPP1Q9BX95 441 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 MCOLN1Q9GZU1 580 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 THSD1Q9NS62 852 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ZCWPW2A0A1B0GU75 182 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 XKRY2A2RUG3 117 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM212A6NML5 194 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 PRAMEF4O60810 478 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 OR10J4P0C629 311 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 GABRA4P48169 554 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 NFATC4Q14934 902 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 FXNQ16595 210 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 DBX2Q6ZNG2 339 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 VN1R2Q8NFZ6 395 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 OR9I1Q8NGQ6 314 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ISOC1Q96CN7 298 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 TCEAL7Q9BRU2 100 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 DPH1Q9BZG8 443 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 SLC6A17Q9H1V8 727 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 CALHM2Q9HA72 323 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF443Q9Y2A4 671 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 IER3IP1Q9Y5U9 82 aa6.42□□□□□ -1.38
SCN1A-204ENST00000423058 N4BP2Q86UW6 1770 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-204ENST00000423058 LGI1O95970 557 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PENKP01210 267 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 HLA-HP01893 362 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CEBPBP17676 345 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 RPS5P46782 204 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PPP1R8Q12972 351 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM151AQ8N4L1 468 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ACOT4Q8N9L9 421 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 C19orf47Q8N9M1 422 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OR56B1Q8NGI3 324 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OR1E3Q8WZA6 343 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 NT5C3BQ969T7 300 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SLC38A1Q9H2H9 487 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 EGLN3Q9H6Z9 239 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SYNPO2LQ9H987 977 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OLAHQ9NV23 265 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 TDRD15B5MCY1 1934 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF264O43296 627 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BATFQ16520 125 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 MAMDC4Q6UXC1 1216 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 IL34Q6ZMJ4 242 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 FAM57BQ71RH2 274 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 C11orf40Q8WZ69 217 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 FAM122AQ96E09 287 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 DTD2Q96FN9 168 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ENPP4Q9Y6X5 453 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PIK3C2AO00443 1686 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ABHD16AO95870 558 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 NUDT7P0C024 238 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CT45A10P0DMU9 189 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms