RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 DEPDC4Q8N2C3 294 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ZCCHC24Q8N2G6 241 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 ZIC4Q8N9L1 334 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 FAM71CQ8NEG0 241 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 OR4A15Q8NGL6 344 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 TMEM234Q8WY98 164 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ARL8AQ96BM9 186 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 TUBGCP3Q96CW5 907 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ZNF385AQ96PM9 386 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 TRMOQ9BU70 441 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ZNF350Q9GZX5 532 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 SEC61A2Q9H9S3 476 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 SLC17A5Q9NRA2 495 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ATAD3AQ9NVI7 634 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 TMEM160Q9NX00 188 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 EMC3Q9P0I2 261 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 UPB1Q9UBR1 384 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 MALT1Q9UDY8 824 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 TMED7-TICAM2A0A0A6YYA0 188 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 IGHV1-18A0A0C4DH31 117 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 LRP5LA4QPB2 252 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 HAX1O00165 279 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 NR5A2O00482 541 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 KIAA0513O60268 411 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 SCN2BO60939 215 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 PRPS1L1P21108 318 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 IL2RGP31785 369 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 RPL3P39023 403 aaKnown RBP7.07□□□□□ -1.28
VIM-202ENST00000421459 NR4A2P43354 598 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 MAGEA8P43361 318 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TUBA1BP68363 451 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TUBA4AP68366 448 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 KCNJ10P78508 379 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 H3F3AP84243 136 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 SYPL1Q16563 259 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 OR7E24Q6IFN5 339 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 FAM166AQ6J272 317 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 VHLLQ6RSH7 139 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 FRRS1Q6ZNA5 592 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TUBA1AQ71U36 451 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TMEM99Q8N816 258 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 ANKFN1Q8N957 763 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 PIGXQ8TBF5 258 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TCP10LQ8TDR4 215 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 SLC25A43Q8WUT9 341 aaPredicted RBP7.07□□□□□ -1.28
VIM-202ENST00000421459 PROX1Q92786 737 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 MOAP1Q96BY2 351 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 ZBTB9Q96C00 473 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 ROPN1LQ96C74 230 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 ZHX1-C8orf76Q96EF9 292 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 APOPT1Q96IL0 206 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 PRPF18Q99633 342 aaKnown RBP7.07□□□□□ -1.28
VIM-202ENST00000421459 VRK1Q99986 396 aaPredicted RBP7.07□□□□□ -1.28
VIM-202ENST00000421459 AMBRA1Q9C0C7 1298 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TMEM181Q9P2C4 612 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 LPAR3Q9UBY5 353 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 OSGIN1Q9UJX0 560 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 KCNS2Q9ULS6 477 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 TMED7Q9Y3B3 224 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 WDR45Q9Y484 360 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 FLVCR1Q9Y5Y0 555 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 PMF1-BGLAPU3KQ54 211 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 ALPK2Q86TB3 2170 aa7.07□□□□□ -1.28
VIM-202ENST00000421459 WDR91A4D1P6 747 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 DUXAA6NLW8 204 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 GPR171O14626 319 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 AKR7A3O95154 331 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 LGI1O95970 557 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 TGFAP01135 160 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 APEHP13798 732 aaKnown RBP7.06□□□□□ -1.28
VIM-202ENST00000421459 TACR3P29371 465 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 GZMKP49863 264 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 PDLIM4P50479 330 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SLC16A1P53985 500 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 NME5P56597 212 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 CLDN8P56748 225 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 EMX2Q04743 252 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 CHRNB3Q05901 458 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 BNIP2Q12982 314 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 CEACAM7Q14002 265 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SLC17A1Q14916 467 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 PDCD2Q16342 344 aaPredicted RBP7.06□□□□□ -1.28
VIM-202ENST00000421459 IQCCQ4KMZ1 466 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 GPAT3Q53EU6 434 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 LINGO2Q7L985 606 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 GRINAQ7Z429 371 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SPATA19Q7Z5L4 167 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 ARFGAP2Q8N6H7 521 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 AURKBQ96GD4 344 aaPredicted RBP7.06□□□□□ -1.28
VIM-202ENST00000421459 PKNOX2Q96KN3 472 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 PIMREGQ9BSJ6 248 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 BPESC1Q9GZL8 116 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SAP130Q9H0E3 1048 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 AKTIPQ9H8T0 292 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 FKRPQ9H9S5 495 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.06□□□□□ -1.28
VIM-202ENST00000421459 EXD2Q9NVH0 621 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 MID2Q9UJV3 735 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 DCTN4Q9UJW0 460 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SLC35A3Q9Y2D2 325 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms