RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TACR3P29371 465 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 HPCAP84074 193 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 BNIP2Q12982 314 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 STX3Q13277 289 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 GABRA6Q16445 453 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 C11orf71Q6IPW1 123 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 DNAJC14Q6Y2X3 702 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 DNM1P46Q6ZS02 220 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 ZNF621Q6ZSS3 439 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 ANKRD42Q8N9B4 389 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 WDR31Q8NA23 367 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 PIGXQ8TBF5 258 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 CCDC115Q96NT0 180 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 USB1Q9BQ65 265 aaKnown RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 WDR55Q9H6Y2 383 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 POLE3Q9NRF9 147 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC6A13Q9NSD5 602 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 RLIMQ9NVW2 624 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 ASB6Q9NWX5 421 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 TMEM181Q9P2C4 612 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 HDGFL3Q9Y3E1 203 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SPIN1Q9Y657 262 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 FAM234BA2RU67 622 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 BIRC5O15392 142 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 LY6HO94772 140 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 GKN3PP0CG01 181 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 KITP10721 976 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 TTKP33981 857 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 MAGEA8P43361 318 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 FABP6P51161 128 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 NUDT6P53370 316 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 LGALS3BPQ08380 585 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 BST1Q10588 318 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 PDK3Q15120 406 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 MAPK11Q15759 364 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 ETFDHQ16134 617 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 TSPO2Q5TGU0 170 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 AGAP6Q5VW22 663 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 HMBOX1Q6NT76 420 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 TMEM108Q6UXF1 575 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 VRK2Q86Y07 508 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 ZNF525Q8N782 197 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 VPS37AQ8NEZ2 397 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 WDR60Q8WVS4 1066 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 ZIM3Q96PE6 472 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 PANX1Q96RD7 426 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 MANSC1Q9H8J5 431 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 MEAF6Q9HAF1 191 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 AIG1Q9NVV5 245 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 TAS2R16Q9NYV7 291 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 BTNL2Q9UIR0 455 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 FLVCR1Q9Y5Y0 555 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 ATP23Q9Y6H3 246 aa10.16□□□□□ -0.78
USP4-204ENST00000416417 CADP27708 2225 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 AGAP5A6NIR3 686 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 KLF11O14901 512 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 CD5LO43866 347 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 AKR7A3O95154 331 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 NR2F1P10589 423 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 EPHA3P29320 983 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 POLR2HP52434 150 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 CLNS1AP54105 237 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 H3F3AP84243 136 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 CEACAM7Q14002 265 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 GTDC1Q4AE62 458 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 CEP85LQ5SZL2 805 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 MRPL2Q5T653 305 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 WDR93Q6P2C0 686 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 P2RY8Q86VZ1 359 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 TMEM99Q8N816 258 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 MGARPQ8TDB4 240 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 DDIT4LQ96D03 193 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 RADILQ96JH8 1075 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 MUS81Q96NY9 551 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 ZNF385AQ96PM9 386 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 TRNT1Q96Q11 434 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 OR52E6Q96RD3 313 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 DHRS9Q9BPW9 319 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 RHNO1Q9BSD3 238 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 PARD6BQ9BYG5 372 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 EXOSC3Q9NQT5 275 aaKnown RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 CBLN4Q9NTU7 201 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 FAIMQ9NVQ4 179 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 UPB1Q9UBR1 384 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 MALT1Q9UDY8 824 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.15□□□□□ -0.78
USP4-204ENST00000416417 CUBNO60494 3623 aa10.15□□□□□ -0.78
USP4-204ENST00000416417 A0A096LNT2 108 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 PDLIM1O00151 329 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 GPR171O14626 319 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 TM9SF1O15321 606 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 PGRP06401 933 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 GUSBP08236 651 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 PRG2P13727 222 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 ETFAP13804 333 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 IL7RP16871 459 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 PTAFRP25105 342 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 SLC16A1P53985 500 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 SLC35A1P78382 337 aa10.14□□□□□ -0.79
USP4-204ENST00000416417 EPS8Q12929 822 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms