RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SPATC1Q76KD6 591 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CLEC14AQ86T13 490 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CPNE8Q86YQ8 564 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ZFP82Q8N141 532 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 IL17RDQ8NFM7 739 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 OR51L1Q8NGJ5 315 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 OIT3Q8WWZ8 545 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 AUTS2Q8WXX7 1259 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 HAS2Q92819 552 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 IL21RQ9HBE5 538 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 TRAV36DV7A0A075B6V5 113 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ARGFXA6NJG6 315 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SULT2B1O00204 365 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SERPINA7P05543 415 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CPMP14384 443 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ACHEP22303 614 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PRDX3P30048 256 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SOX18P35713 384 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SHC2P98077 582 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SLC14A1Q13336 389 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ASAH1Q13510 395 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CAMK2BQ13554 666 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF684Q5T5D7 378 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 UBE2UQ5VVX9 321 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ACOT4Q8N9L9 421 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SLC30A7Q8NEW0 376 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 NDNFQ8TB73 568 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF566Q969W8 418 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 NIPSNAP3BQ9BS92 247 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 WASH6PQ9NQA3 447 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 IL20RAQ9UHF4 553 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 FZD7O75084 574 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SULT1C4O75897 302 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 VAMP5O95183 116 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SPDEFO95238 335 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GLB1P16278 677 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SUB1P53999 127 aaKnown RBP eCLIP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GPR85P60893 370 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SIRPAP78324 504 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CDC20Q12834 499 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PPP1R8Q12972 351 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 HNF4GQ14541 408 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CTU2Q2VPK5 515 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF628Q5EBL2 1059 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 C1orf220Q5T0J3 134 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CFAP77Q6ZQR2 320 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GPR155Q7Z3F1 870 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CLECL1Q8IZS7 167 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 OR14L1PQ8NHC6 308 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 OR1E3Q8WZA6 343 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MARC2Q969Z3 335 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 UBXN10Q96LJ8 280 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 FIZ1Q96SL8 496 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PCYT2Q99447 389 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 APOOQ9BUR5 198 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF416Q9BWM5 594 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 EXOSC3Q9NQT5 275 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PGAP2Q9UHJ9 254 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 LAMP3Q9UQV4 416 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PCDHGA5Q9Y5G8 931 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 USP3Q9Y6I4 520 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 HEPACAM2A8MVW5 462 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MCRIP1C9JLW8 97 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GABARAPH6UMI1 98 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 TNFRSF10AO00220 468 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 TO15178 435 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 TOXO94900 526 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SNAI1O95863 264 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 HLA-AP01891 365 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 C1QBP02746 253 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CCL5P13501 91 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 LAP3P28838 519 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ERVK-25P63136 954 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MS4A2Q01362 244 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 BCL7AQ4VC05 210 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PAGE3Q5JUK9 113 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 DHRS4L2Q6PKH6 230 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 FAM185AQ8N0U4 392 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PXT1Q8NFP0 134 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ABHD5Q8WTS1 349 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CRYGNQ8WXF5 182 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PSMF1Q92530 271 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 KHSRPQ92945 711 aaKnown RBP eCLIP5.7□□□□□ -1.52e-6■■■□□ 17.2
SCN1A-203ENST00000409050 SCAMP4Q969E2 229 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 NEURL3Q96EH8 262 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 KATNB1Q9BVA0 655 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 DPH1Q9BZG8 443 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 RIMS4Q9H426 269 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 IL26Q9NPH9 171 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CHRNA9Q9UGM1 479 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ADAMTS5Q9UNA0 930 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 hCG_1807616A0A1W2PRN6 198 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TCRBV21S2A2A0A5A6 115 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 A6NCN8 305 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 CCDC85CA6NKD9 419 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 OR7A17O14581 309 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 LDB2O43679 373 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 HPGDSO60760 199 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 SNCGO76070 127 aa5.69□□□□□ -1.5
SCN1A-203ENST00000409050 TPPPO94811 219 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms