RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PGGHGQ32M88 737 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TTLL10Q6ZVT0 673 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 DPPA4Q7L190 304 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CPXM2Q8N436 756 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 OR4K14Q8NGD5 310 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 LYSMD1Q96S90 227 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GHITMQ9H3K2 345 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GPR55Q9Y2T6 319 aaPredicted RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 A0A1W2PRQ8 180 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 LRRN3E7EW58 273 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 B3GALT2O43825 422 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 NFATC1O95644 943 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MYOGP15173 224 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 HIST1H1TP22492 207 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 AFF3P51826 1226 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PER3P56645 1201 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SNRPGP62308 76 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 CLDN22Q8N7P3 220 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 TEX19Q8NA77 164 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF563Q8TA94 476 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 THEM6Q8WUY1 208 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 TSACCQ96A04 125 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 INSM2Q96T92 566 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 LRRN3Q9H3W5 708 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 METTL8Q9H825 291 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 V9GYH0 126 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SCN4AP35499 1836 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 WDPCPO95876 746 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 LALBAP00709 142 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 IGHA2P01877 340 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 GIMD1P0DJR0 217 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SQSTM1Q13501 440 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 CDKN3Q16667 212 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF674Q2M3X9 581 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MINDY4Q4G0A6 757 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SHEQ5VZ18 495 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 KCTD9Q7L273 389 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 GJD3Q8N144 294 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 LINC00471Q8N535 108 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 GHSRQ92847 366 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 C14orf79Q96F83 325 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MEGF10Q96KG7 1140 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 GAL3ST4Q96RP7 486 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PDCD1LG2Q9BQ51 273 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MED18Q9BUE0 208 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MIXL1Q9H2W2 232 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 FN3KQ9H479 309 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 KCMF1Q9P0J7 381 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 RCE1Q9Y256 329 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ARPC1BO15143 372 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 LIPCP11150 499 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 RAB28P51157 221 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 NDUFA6P56556 154 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ALKBH1Q13686 389 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 CRMP1Q14194 572 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SCGB2B2Q4G0G5 96 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 QSOX2Q6ZRP7 698 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SFTPA1Q8IWL2 248 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ADGRF3Q8IZF5 1079 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MSLNLQ96KJ4 702 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 OR2M4Q96R27 311 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 FLVCR2Q9UPI3 526 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 EDDM13A0A1B0GTR0 161 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 GXYLT2A0PJZ3 443 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PRRT4C9JH25 899 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 KHNYNO15037 678 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 CREBL2O60519 120 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 SLC19A2O60779 497 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 FZD7O75084 574 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 TEAD1P28347 426 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 RPP30P78346 268 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ASAH1Q13510 395 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PDSS1Q5T2R2 415 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 H3F3CQ6NXT2 135 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 Q6ZNB5 142 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 MRPL43Q8N983 215 aaKnown RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 OR2L2Q8NH16 312 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PFN4Q8NHR9 129 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 ZDHHC1Q8WTX9 485 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 HHIPL1Q96JK4 782 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 NKX3-1Q99801 234 aaPredicted RBP11.09□□□□□ -0.63
HMGB1-206ENST00000405805 EXO5Q9H790 373 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 PPP4R1LQ9P1A2 415 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 A4GNTQ9UNA3 340 aa11.09□□□□□ -0.63
HMGB1-206ENST00000405805 A0A1W2PR48 441 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 LINC00587B1AMM8 73 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 PLA2G10O15496 165 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 DOK2O60496 412 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 UCHL1P09936 223 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF888P0CJ79 500 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF10P21506 573 aaPredicted RBP11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ITGB8P26012 769 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 AKR1C3P42330 323 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 KCNJ3P48549 501 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 TSPAN31Q12999 210 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 TUSC1Q2TAM9 212 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 C3orf38Q5JPI3 329 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 TMPRSS12Q86WS5 348 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 SIAH3Q8IW03 269 aa11.08□□□□□ -0.64
HMGB1-206ENST00000405805 ARMC10Q8N2F6 343 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms