RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 FAM86B1Q8N7N1 296 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ZNF614Q8N883 585 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 GATSQ8NAP1 163 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 SMYD1Q8NB12 490 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 FAM83FQ8NEG4 500 aaPredicted RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 OR6T1Q8NGN1 323 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 FAM57AQ8TBR7 257 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 LZICQ8WZA0 190 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 NRGNQ92686 78 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 FAM162AQ96A26 154 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ZBTB8AQ96BR9 441 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 DUS3LQ96G46 650 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 ADAM19Q9H013 955 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 DSN1Q9H410 356 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 MAGIXQ9H6Y5 334 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 PTGES2Q9H7Z7 377 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 C12orf10Q9HB07 376 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 CACYBPQ9HB71 228 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 ACER3Q9NUN7 267 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 MED17Q9NVC6 651 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ADPRHL2Q9NX46 363 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 TESQ9UGI8 421 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 PRR14LQ5THK1 2151 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 LINC01387J3KSC0 135 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 AP3D1O14617 1153 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PRRG2O14669 202 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 HCN1O60741 890 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 FZD7O75084 574 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 GMNNO75496 209 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PRKD3O94806 890 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PRSS23O95084 383 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 LYPD3O95274 346 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 CLDN14O95500 239 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 UMPSP11172 480 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PGCP20142 388 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 TCEA1P23193 301 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 CHMP24386 653 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 DPP4P27487 766 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ELK4P28324 431 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 EIF1P41567 113 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 SLC1A3P43003 542 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 MAP2K6P52564 334 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 NUP107P57740 925 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PMPCAQ10713 525 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 FLOT2Q14254 428 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 QPRTQ15274 297 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 TOMM34Q15785 309 aaPredicted RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 IFI44LQ53G44 452 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 KRTCAP3Q53RY4 240 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ZNF613Q6PF04 617 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ENPP6Q6UWR7 440 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ARSKQ6UWY0 536 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 MEX3BQ6ZN04 569 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 TSPYL5Q86VY4 417 aaPredicted RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 ADGRG5Q8IZF4 528 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 PAPD5Q8NDF8 572 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 OR4K17Q8NGC6 315 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 NEIL3Q8TAT5 605 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 POC1BQ8TC44 478 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 SLC26A7Q8TE54 656 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 GEMIN6Q8WXD5 167 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 PROX1Q92786 737 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 CCDC124Q96CT7 223 aaKnown RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 SH3YL1Q96HL8 342 aaPredicted RBP8.28□□□□□ -1.08
VPS53-203ENST00000401468 PYURFQ96I23 114 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 MRGPRX4Q96LA9 322 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 DHRS1Q96LJ7 313 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 DMRTA2Q96SC8 542 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 NPAS1Q99742 590 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ZNF426Q9BUY5 554 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 SLC6A15Q9H2J7 730 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 EXO5Q9H790 373 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 IL1RAPQ9NPH3 570 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 KLHL28Q9NXS3 571 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 TAS2R10Q9NYW0 307 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 SPRR3Q9UBC9 169 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 RNF6Q9Y252 685 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 SLC9A8Q9Y2E8 581 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 NAV3Q8IVL0 2385 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 ABCA2Q9BZC7 2435 aa8.28□□□□□ -1.08
VPS53-203ENST00000401468 A0A0B4J2E0 115 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 A0A1B0GX12 115 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 M0R3H8 397 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 AQP7O14520 342 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 FFAR1O14842 300 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 FRS3O43559 492 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 RRP9O43818 475 aaKnown RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 THY1P04216 161 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 GPIP06744 558 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 GKN3PP0CG01 181 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 THRBP10828 461 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 UQCRBP14927 111 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 NQO1P15559 274 aaKnown RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 FKBP2P26885 142 aaKnown RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 GDF1P27539 372 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 APOBEC1P41238 236 aaKnown RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 HTR3AP46098 478 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 ZNF41P51814 821 aaPredicted RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 SMSP52788 366 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 RGS8P57771 180 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms