RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SMURF2Q9HAU4 748 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 PROK2Q9HC23 129 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 DEPPQ9NTK1 212 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 CHRNA9Q9UGM1 479 aa12.88□□□□□ -0.35
SKA1-202ENST00000398452 RPH3AQ9Y2J0 694 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 MAGED1Q9Y5V3 778 aaPredicted RBP12.88□□□□□ -0.35
SKA1-202ENST00000398452 EFCAB9A8MZ26 197 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 RNF223E7ERA6 249 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 LINC01387J3KSC0 135 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 OR2T1O43869 369 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 GASTP01350 101 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 THY1P04216 161 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 HIST1H2ABP04908 130 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 ALPLP05186 524 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 PLA2G2AP14555 144 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 POU2F1P14859 743 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 ZNF17P17021 662 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 ZNF26P17031 533 aaPredicted RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 ELK4P28324 431 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 PRKCDQ05655 676 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 ZNF169Q14929 603 aaPredicted RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 SEC23BQ15437 767 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 SLC25A53Q5H9E4 307 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 C3orf33Q6P1S2 294 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 C1orf94Q6P1W5 598 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 PGBD2Q6P3X8 592 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 TBPL2Q6SJ96 375 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 HIST3H2AQ7L7L0 130 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 TSPYL5Q86VY4 417 aaPredicted RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 ATP6V1C2Q8NEY4 427 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 STK35Q8TDR2 534 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 HIST1H2ACQ93077 130 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 BPIFA2Q96DR5 249 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 FAM46AQ96IP4 442 aaKnown RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 SFXN2Q96NB2 322 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 SLC29A1Q99808 456 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 DGCR6LQ9BY27 220 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 HES7Q9BYE0 225 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 TTTY12Q9BZ98 90 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 RIBC2Q9H4K1 309 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 EXO5Q9H790 373 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 QPCTLQ9NXS2 382 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 MRPS18CQ9Y3D5 142 aaKnown RBP12.87□□□□□ -0.35
SKA1-202ENST00000398452 KALRNO60229 2985 aa12.87□□□□□ -0.35
SKA1-202ENST00000398452 MED13Q9UHV7 2174 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 TRAV36DV7A0A075B6V5 113 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 A0A0G2JMM0 328 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 A0A1W2PPB8 328 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 A0A1W2PRS3 328 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 ENO4A6NNW6 628 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 FAM166BA8MTA8 275 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 KIR3DP1A8MWS1 328 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 H3BN98 237 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 ADAM10O14672 748 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 TFECO14948 347 aaPredicted RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 ZNF208O43345 1280 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 PTNP21246 168 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 PPIAP62937 165 aaKnown RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 PPP2R2BQ00005 443 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 MFSD13AQ14CX5 517 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 KDM4DQ6B0I6 523 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 FAHD1Q6P587 224 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 PRICKLE2Q7Z3G6 844 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 GALNT5Q7Z7M9 940 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 GTPBP8Q8N3Z3 284 aaPredicted RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 DHRSXQ8N5I4 330 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 PFN4Q8NHR9 129 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 C9orf43Q8TAL5 461 aaPredicted RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 SNRNP27Q8WVK2 155 aaKnown RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 BARD1Q99728 777 aaKnown RBP12.86□□□□□ -0.35
SKA1-202ENST00000398452 LDAHQ9H6V9 325 aa12.86□□□□□ -0.35
SKA1-202ENST00000398452 CPAMD8Q8IZJ3 1885 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 TMEM72A0PK05 275 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 C7orf72A4D263 438 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 UNC119BA6NIH7 251 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 LRRC3CA6NJW4 275 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 ETV2O00321 342 aaPredicted RBP12.85□□□□□ -0.35
SKA1-202ENST00000398452 PIP5K1CO60331 668 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 LYPD3O95274 346 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 ZNF24P17028 368 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 BMP7P18075 431 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 CBLP22681 906 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 FPR3P25089 353 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 POU1F1P28069 291 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 RFC3P40938 356 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 GPR4P46093 362 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 SLC9A3P48764 834 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 CLK1P49759 484 aaKnown RBP12.85□□□□□ -0.35
SKA1-202ENST00000398452 DAPP51397 102 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 AQP4P55087 323 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 DLX5P56178 289 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 CTBP2P56545 445 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 TSPAN31Q12999 210 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 SLC10A1Q14973 349 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 PDSS1Q5T2R2 415 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 TTC23Q5W5X9 447 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 RPL13AP3Q6NVV1 102 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 LINC00114Q6XXX2 140 aa12.85□□□□□ -0.35
SKA1-202ENST00000398452 WDR88Q6ZMY6 472 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms