RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TOE1Q96GM8 510 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 PAAF1Q9BRP4 392 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 GSTO2Q9H4Y5 243 aa11.97□□□□□ -0.49
CCDC88C-204ENST00000389857 SULT1B1O43704 296 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ADAM23O75077 832 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ACP2P11117 423 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 HLA-DMAP28067 261 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 RRADP55042 308 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 RNF4P78317 190 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 SPOCK1Q08629 439 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF486Q96H40 463 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF355PQ9NSJ1 428 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 A0A0D9SG52 128 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 OR5K3A6NET4 321 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 TNK1Q13470 666 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ZNF74Q16587 644 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 LPCAT3Q6P1A2 487 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 RFPL4BQ6ZWI9 263 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 MRPL10Q7Z7H8 261 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 OR52D1Q9H346 318 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 ELOVL3Q9HB03 270 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 SH3BGRL2Q9UJC5 107 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 EMC9Q9Y3B6 208 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 NUP188Q5SRE5 1749 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 TMEM212A6NML5 194 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 KDM4EB2RXH2 506 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 C1orf105O95561 183 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 HEXAP06865 529 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 PLA2G7Q13093 441 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 PGGHGQ32M88 737 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 OR56B1Q8NGI3 324 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 HHIPL1Q96JK4 782 aa11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 PHRF1Q9P1Y6 1649 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-204ENST00000389857 AGAP14A8MT82 685 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 HBE1P02100 147 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 CPMP14384 443 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 MMP12P39900 470 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 NPBWR1P48145 328 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF595Q8IYB9 648 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 DRAXINQ8NBI3 349 aaPredicted RBP11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF566Q969W8 418 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SGPP1Q9BX95 441 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 LIN7BQ9HAP6 207 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SUSD5O60279 629 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 HMGN2P05204 90 aaKnown RBP11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SNRNP70P08621 437 aaKnown RBP11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ARSAP15289 507 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 CEBPBP17676 345 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 CXCL12P48061 93 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SRPXP78539 464 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 MLLT11Q13015 90 aaPredicted RBP11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC36A2Q495M3 483 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ATPAF1Q5TC12 328 aaPredicted RBP11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 TCEAL8Q8IYN2 117 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ULBP3Q9BZM4 244 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 PRDM9Q9NQV7 894 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 RASD1Q9Y272 281 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 NKX6-3A6NJ46 265 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 HTR6P50406 440 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 MBTPS1Q14703 1052 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 PAGE3Q5JUK9 113 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF691Q5VV52 312 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 CD300LGQ6UXG3 332 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 SVBPQ8N300 66 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 MED16Q9Y2X0 877 aa11.96□□□□□ -0.5
CCDC88C-204ENST00000389857 OR52A4PA6NMU1 304 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF891A8MT65 544 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 K7EPK0 472 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ONECUT3O60422 494 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 SDC1P18827 310 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 GIFP27352 417 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 PRDX3P30048 256 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 CD68P34810 354 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 PGGT1BP53609 377 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 DBPQ10586 325 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 EXOSC7Q15024 291 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 LPAL2Q16609 132 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM71E2Q8N5Q1 922 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 C1orf198Q9H425 327 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 KCNK2O95069 426 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM189BP81408 668 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 AKR1C1Q04828 323 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 RPL22L1Q6P5R6 122 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 LIPIQ6XZB0 460 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 LRP10Q7Z4F1 713 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 RNF113BQ8IZP6 322 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 MITD1Q8WV92 249 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 OR2M2Q96R28 347 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 HRH4Q9H3N8 390 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 PRELID3BQ9Y3B1 194 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 GABRR3A8MPY1 467 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 CRYZL1O95825 349 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 SCGB1D1O95968 90 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 HOXB5P09067 269 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 AHRP35869 848 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 POU3F1Q03052 451 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC35G1Q2M3R5 365 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 HNRNPA1L2Q32P51 320 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 PODNL1Q6PEZ8 512 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF546Q86UE3 836 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms