RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 A0A1W2PPK0 400 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PRR32B1ATL7 298 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SRPX2O60687 465 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 NSA2O95478 260 aaKnown RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 EIF4EP06730 217 aaKnown RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 HK1P19367 917 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 RBM34P42696 430 aaKnown RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 FASLGP48023 281 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ZNHIT3Q15649 155 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ULK3Q6PHR2 472 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 CBLN3Q6UW01 205 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF595Q8IYB9 648 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 OR4M2Q8NGB6 313 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 KIAA1143Q96AT1 154 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TCTN2Q96GX1 697 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TTYH2Q9BSA4 534 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SLC22A4Q9H015 551 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 FBXL21Q9UKT6 434 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 COPS3Q9UNS2 423 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 A0A087WUJ7 227 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SERINC4A6NH21 518 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 H3BMH7 237 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SDC3O75056 442 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PAHP00439 452 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 KRT8P05787 483 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 GUSBP08236 651 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SLC2A2P11168 524 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF3P17036 446 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 IL18Q14116 193 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 DEFB133Q30KQ1 61 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 CCDC58Q4VC31 144 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 KLHL26Q53HC5 615 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 DMKNQ6E0U4 476 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 RFPL4BQ6ZWI9 263 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PXKQ7Z7A4 578 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TMEM151BQ8IW70 566 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PTPMT1Q8WUK0 201 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 C3orf49Q96BT1 292 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 NMNAT3Q96T66 252 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 CTRCQ99895 268 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TRIM36Q9NQ86 728 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.26□□□□□ -0.45
CCDC3-202ENST00000378839 UCKL1Q9NWZ5 548 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 HAO2Q9NYQ3 351 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 NPAP1Q9NZP6 1156 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 A0A0B4J203 849 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 OR6C68A6NDL8 312 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 MT-ND5P03915 603 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 PYCR1P32322 319 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 NAA10P41227 235 aaPredicted RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 MTNR1BP49286 362 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 AGFG1P52594 562 aaKnown RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 FNDC7Q5VTL7 733 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 CEACAM19Q7Z692 300 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 NPEPL1Q8NDH3 523 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 MOSPD2Q8NHP6 518 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 RASD2Q96D21 266 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 DEPDC7Q96QD5 511 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 KCNJ15Q99712 375 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 SMAD5Q99717 465 aaKnown RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 IDSB3KWA1 339 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 PRAMEF2O60811 474 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 CSTAP01040 98 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 NME1P15531 152 aaKnown RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 GALP22466 123 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 CD1CP29017 333 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 SLC6A6P31641 620 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 GHSRQ92847 366 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 RNF166Q96A37 237 aaPredicted RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF486Q96H40 463 aaPredicted RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 TMEM43Q9BTV4 400 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 NDC1Q9BTX1 674 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 LANCL2Q9NS86 450 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 NUFIP1Q9UHK0 495 aaKnown RBP12.25□□□□□ -0.45
CCDC3-202ENST00000378839 ITGB1BP2Q9UKP3 347 aa12.25□□□□□ -0.45
CCDC3-202ENST00000378839 A0A1W2PRG6 482 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 ZSCAN5BA6NJL1 495 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 SELENOFO60613 162 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 RPS11P62280 158 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC3-202ENST00000378839 ZNF544Q6NX49 715 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 MED25Q71SY5 747 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 PELI1Q96FA3 418 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 LMAN1LQ9HAT1 526 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 Q9N2J8 555 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 KLHL1Q9NR64 748 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 GMEB2Q9UKD1 530 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 RASD1Q9Y272 281 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 FAM171A2A8MVW0 826 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 IFNA16P05015 189 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 MYF5P13349 255 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 GLULP15104 373 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 OR1D4P47884 311 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 BLKP51451 505 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 ERVK-25P63136 954 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 C17orf82Q86X59 251 aaPredicted RBP12.24□□□□□ -0.45
CCDC3-202ENST00000378839 FAM98AQ8NCA5 519 aaKnown RBP12.24□□□□□ -0.45
CCDC3-202ENST00000378839 OR4M1Q8NGD0 313 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 TSLPQ969D9 159 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 ORAI1Q96D31 301 aa12.24□□□□□ -0.45
CCDC3-202ENST00000378839 MOGAT1Q96PD6 335 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms