RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 K7EQM0 130 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 M0R3H8 397 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GJB5O95377 273 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CD46P15529 392 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 F2RP25116 425 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TLE4Q04727 773 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TMEM59Q9BXS4 323 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 MAGEB4O15481 346 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TNK1Q13470 666 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 POU4F3Q15319 338 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PRR22Q8IZ63 422 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PRAMEF27A3QJZ7 478 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 OR2T1O43869 369 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CLEC3BP05452 202 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SRPXP78539 464 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PRAMEF9Q5VWM5 478 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 DESI1Q6ICB0 168 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SAT2Q96F10 170 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 OR52A5Q9H2C5 316 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GNG12Q9UBI6 72 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SRPK3Q9UPE1 567 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.7□□□□□ -0.549e-7■■■■■ 31.2
VPS13A-204ENST00000376634 H7C1Q1 480 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 HCRTO43612 131 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ZXDBP98169 803 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 C1orf61Q13536 156 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GCNT2Q8N0V5 402 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SAGE1Q9NXZ1 904 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ANKMY1Q9P2S6 941 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ENPP5Q9UJA9 477 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PCDHGA1Q9Y5H4 931 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 LRRC30A6NM36 301 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 FADS1O60427 444 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 NAA40Q86UY6 237 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 MMP28Q9H239 520 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 SLC22A7Q9Y694 548 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ACACAQ13085 2346 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 NUPL2O15504 423 aaKnown RBP11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF551Q7Z340 670 aaPredicted RBP11.69□□□□□ -0.54
VPS13A-204ENST00000376634 CMTM2Q8TAZ6 248 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 PDCD1LG2Q9BQ51 273 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 STC2O76061 302 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ITGB7P26010 798 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 PAX6P26367 422 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 MMP12P39900 470 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 BTN1A1Q13410 526 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 Q6ZSR6 202 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF546Q86UE3 836 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 MICU1Q9BPX6 476 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ARHGAP39Q9C0H5 1083 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 CSNK1G3Q9Y6M4 447 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 TRBV11-1A0A0K0K1C0 115 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 KEAP1Q14145 624 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF684Q5T5D7 378 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 EMC10Q5UCC4 262 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 LHX6Q9UPM6 363 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 CXCR4P61073 352 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 RAB40BQ12829 278 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 OR1J2Q8NGS2 313 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 NIPSNAP3BQ9BS92 247 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 RIMS3Q9UJD0 308 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 GJD2Q9UKL4 321 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 YIF1BQ5BJH7 314 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 PTRH2Q9Y3E5 179 aaKnown RBP11.69□□□□□ -0.54
VPS13A-204ENST00000376634 F6UZH7 168 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 TNFRSF1BP20333 461 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 IMPA1P29218 277 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 MKXQ8IYA7 352 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 RNF175Q8N4F7 328 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 NMNAT1Q9HAN9 279 aaPredicted RBP11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ACKR4Q9NPB9 350 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 HIDE1A8MVS5 230 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 PIRO00625 290 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 CHEK1O14757 476 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ITGB2P05107 769 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 TUBB1Q9H4B7 451 aa11.69□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF443Q9Y2A4 671 aaPredicted RBP11.69□□□□□ -0.54
VPS13A-204ENST00000376634 BTBD17A6NE02 478 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 MEIS3P2A8K0S8 358 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 F2P00734 622 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 SEC61A1P61619 476 aaKnown RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 SH3BP2P78314 561 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 RBMS3Q6XE24 437 aaKnown RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 MFSD6LQ8IWD5 586 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 COL11A1P12107 1806 aaPredicted RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 TMEM212A6NML5 194 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 GSCP56915 257 aaPredicted RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 IGSF8Q969P0 613 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 PITHD1Q9GZP4 211 aaPredicted RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 THSD1Q9NS62 852 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 CRYBG1Q9Y4K1 1723 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 METTL15P1P0C7V9 234 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 RBMS2Q15434 407 aaKnown RBP11.68□□□□□ -0.54
VPS13A-204ENST00000376634 CTSL3PQ5NE16 218 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 SLC6A19Q695T7 634 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 VHLLQ6RSH7 139 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 BRI3BPQ8WY22 251 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 ITPKCQ96DU7 683 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 RTP3Q9BQQ7 232 aa11.68□□□□□ -0.54
VPS13A-204ENST00000376634 TNFRSF10AO00220 468 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms