RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RTL4Q6ZR62 310 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 NUP54Q7Z3B4 507 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 IGFN1Q86VF2 1251 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 ALDH16A1Q8IZ83 802 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CYP4Z2PQ8N1L4 340 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TTC9Q92623 222 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TMCO6Q96DC7 493 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TMEM80Q96HE8 168 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 PLEKHA8Q96JA3 519 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 TEX12Q9BXU0 123 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 MED20Q9H944 212 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 MMP25Q9NPA2 562 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 CMC2Q9NRP2 79 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 FAM86C1Q9NVL1 165 aa12.54□□□□□ -0.4
PTPRF-202ENST00000372405 LSM2Q9Y333 95 aaKnown RBP12.54□□□□□ -0.4
PTPRF-202ENST00000372405 A0A1W2PPW3 197 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 ITGA10O75578 1167 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 SOX3P41225 446 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 SLC9A3P48764 834 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 CDH11P55287 796 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 LSAMPQ13449 338 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 EXT1Q16394 746 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 NTRK2Q16620 822 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 C3orf38Q5JPI3 329 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 NXNL2Q5VZ03 156 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 PLBD1Q6P4A8 553 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 POMZP3Q6PJE2 187 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 GLRX5Q86SX6 157 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 ERI1Q8IV48 349 aaKnown RBP12.53□□□□□ -0.4
PTPRF-202ENST00000372405 C9orf43Q8TAL5 461 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-202ENST00000372405 M1APQ8TC57 530 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 SLC22A8Q8TCC7 542 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 RAB2BQ8WUD1 216 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 LIPHQ8WWY8 451 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 SPACA9Q96E40 222 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-202ENST00000372405 RNFT2Q96EX2 444 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF160Q9HCG1 818 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 CHRNA9Q9UGM1 479 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF337Q9Y3M9 751 aa12.53□□□□□ -0.4
PTPRF-202ENST00000372405 ZC3H12DA2A288 527 aaKnown RBP12.52□□□□□ -0.4
PTPRF-202ENST00000372405 CDC40O60508 579 aaKnown RBP eCLIP12.52□□□□□ -0.48e-7■■□□□ 14.2
PTPRF-202ENST00000372405 LRP3O75074 770 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 GABARAPO95166 117 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 NDUFB2O95178 105 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 RAB40ALP0C0E4 278 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 F8A1P23610 371 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 SLC6A6P31641 620 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 MTNR1AP48039 350 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 TIGD6Q17RP2 521 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 ZNF791Q3KP31 576 aaPredicted RBP12.52□□□□□ -0.4
PTPRF-202ENST00000372405 C1QL3Q5VWW1 255 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 NDUFAF7Q7L592 441 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 CXXC5Q7LFL8 322 aaKnown RBP12.52□□□□□ -0.4
PTPRF-202ENST00000372405 SHFQ7M4L6 423 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 MISPQ8IVT2 679 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 PTP4A1Q93096 173 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 TAAR8Q969N4 342 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 NCDNQ9UBB6 729 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 DIMT1Q9UNQ2 313 aaKnown RBP12.52□□□□□ -0.4
PTPRF-202ENST00000372405 ADAM18Q9Y3Q7 739 aa12.52□□□□□ -0.4
PTPRF-202ENST00000372405 NSG1A0A0A6YYJ2 146 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 ASAH2BP0C7U1 165 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 PEPDP12955 493 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 GP1BBP13224 206 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 NOS3P29474 1203 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 TMED10P49755 219 aaKnown RBP12.52□□□□□ -0.41
PTPRF-202ENST00000372405 ETV1P50549 477 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 C17orf67Q0P5P2 114 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 EIF3IQ13347 325 aaKnown RBP12.52□□□□□ -0.41
PTPRF-202ENST00000372405 STPG1Q5TH74 334 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 RNLSQ5VYX0 342 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 NIPAL3Q6P499 406 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 B3GLCTQ6Y288 498 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 ADGRG3Q86Y34 549 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 MOSPD2Q8NHP6 518 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 CRELD1Q96HD1 420 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 DCUN1D5Q9BTE7 237 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 FN3KQ9H479 309 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 GPN2Q9H9Y4 310 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-202ENST00000372405 FGF20Q9NP95 211 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-202ENST00000372405 TAS2R10Q9NYW0 307 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 MED11Q9P086 117 aa12.52□□□□□ -0.41
PTPRF-202ENST00000372405 FARSAQ9Y285 508 aaKnown RBP12.52□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM72A0PK05 275 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 ANKUB1A6NFN9 424 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 TERTO14746 1132 aaKnown RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 NPIPB7O75200 414 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 RAB36O95755 333 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CD63P08962 238 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CD36P16671 472 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CXCR1P25024 350 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 HTR1FP30939 366 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 OTX2P32243 289 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 PEX19P40855 299 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 Q0VFX4 171 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 RAB40BQ12829 278 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CRMP1Q14194 572 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 SPCS2Q15005 226 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 INPP5JQ15735 1006 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 ARSKQ6UWY0 536 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms