RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 POT1Q9NUX5 634 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 SLC22A5O76082 557 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 APODP05090 189 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 EPXP11678 715 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TYRP1P17643 537 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 RPS27P42677 84 aaKnown RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 VEGFCP49767 419 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 GBX2P52951 348 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PRMT2P55345 433 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 RPS15AP62244 130 aaKnown RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 OC90Q02509 493 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 STX4Q12846 297 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 TEX261Q6UWH6 196 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 DGAT2L6Q6ZPD8 337 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PARGQ86W56 976 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 OR52R1Q8NGF1 315 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 LRRC20Q8TCA0 184 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 RERGQ96A58 199 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PELI1Q96FA3 418 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 HSPA12BQ96MM6 686 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 SEC22CQ9BRL7 303 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 NOX4Q9NPH5 578 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 FLRT3Q9NZU0 649 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 RPS6KB2Q9UBS0 482 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 KLK11Q9UBX7 282 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 PHF11Q9UIL8 331 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 U3KQ87 197 aa11.19□□□□□ -0.62
CLIP3-201ENST00000360535 WDR87Q6ZQQ6 2873 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 H0YGG7 62 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 BLOC1S5-TXNDC5H3BN57 136 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ARF3P61204 181 aaPredicted RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 BTG1P62324 171 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 TFF2Q03403 129 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ESCO2Q56NI9 601 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 SIGIRRQ6IA17 410 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 FCRLAQ7L513 359 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 FTMTQ8N4E7 242 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 RASD2Q96D21 266 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 AHCYL2Q96HN2 611 aaKnown RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ASCC3Q8N3C0 2202 aaKnown RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 A8MUA0 341 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 MCIDASD6RGH6 385 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 AGR2O95994 175 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 CTSBP07858 339 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 C5AR1P21730 350 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 PTBP1P26599 531 aaKnown RBP eCLIP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 SELENOPP49908 381 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 PPP1CAP62136 330 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ERVK-25P63136 954 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ANGPT1Q15389 498 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 HSD17B12Q53GQ0 312 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 POMZP3Q6PJE2 187 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 KANSL1Q7Z3B3 1105 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 CMTM4Q8IZR5 234 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 METTL27Q8N6F8 245 aaPredicted RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ZPLD1Q8TCW7 415 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 CCDC3Q9BQI4 270 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 SEMA4CQ9C0C4 833 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF350Q9GZX5 532 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 RANBP3Q9H6Z4 567 aaPredicted RBP11.18□□□□□ -0.62
CLIP3-201ENST00000360535 NUBP2Q9Y5Y2 271 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 LAMA1P25391 3075 aa11.18□□□□□ -0.62
CLIP3-201ENST00000360535 HRKO00198 91 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 GPR171O14626 319 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 RDH16O75452 317 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 IFNGP01579 166 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 UGT2B7P16662 529 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 NRG3P56975 720 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 RIN1Q13671 783 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 TMEM255AQ5JRV8 349 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 GARNL3Q5VVW2 1013 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 RTL4Q6ZR62 310 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 LIX1LQ8IVB5 337 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF511Q8NB15 262 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 DNAAF1Q8NEP3 725 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 OR51Q1Q8NH59 317 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 FAM3CQ92520 227 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SCMH1Q96GD3 660 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 RSPH9Q9H1X1 276 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 TSPAN10Q9H1Z9 355 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SLC17A4Q9Y2C5 497 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 PTPRSQ13332 1948 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF593O00488 134 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 ARPC1BO15143 372 aaKnown RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 CFDP00746 253 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 TSPAN5P62079 268 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 FAM53BQ14153 422 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 LGALSLQ3ZCW2 172 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 OR52I2Q8NH67 350 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 OR2A5Q96R48 311 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 UBL7Q96S82 380 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SERINC2Q96SA4 455 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 GLTPQ9NZD2 209 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 COPS3Q9UNS2 423 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 C19orf53Q9UNZ5 99 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SATB2Q9UPW6 733 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SPTBN5Q9NRC6 3674 aaKnown RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 TRANK1O15050 2925 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 A0A1B0GTH9 108 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms