RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 METTL15A6NJ78 407 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ERVFC1P60507 584 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 MDGA2Q7Z553 956 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 TMEM18Q96B42 140 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 KIAA2026Q5HYC2 2103 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 NRP1O14786 923 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 LYRM7Q5U5X0 104 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 IL37Q9NZH6 218 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 A0A1W2PPK0 400 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 PIPP12273 146 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-202ENST00000347401 NPBWR1P48145 328 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 GRM7Q14831 915 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 GLYR1Q49A26 553 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-202ENST00000347401 PHYHD1Q5SRE7 291 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 MISPQ8IVT2 679 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ADGRF3Q8IZF5 1079 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 OR2L13Q8N349 312 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 PDLIM5Q96HC4 596 aaKnown RBP12.48□□□□□ -0.41
COL6A3-202ENST00000347401 DHRS9Q9BPW9 319 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 CLSTN3Q9BQT9 956 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF251Q9BRH9 671 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 TNK1Q13470 666 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 NADSYN1Q6IA69 706 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 SSX7Q7RTT5 188 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 BPIFB2Q8N4F0 458 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 OR51L1Q8NGJ5 315 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 CHRDQ9H2X0 955 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 DDAH2O95865 285 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 SLC5A2P31639 672 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ATP1B3P54709 279 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ENDOGQ14249 297 aaKnown RBP12.48□□□□□ -0.41
COL6A3-202ENST00000347401 NKPD1Q17RQ9 610 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 EHFQ9NZC4 300 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 PIRO00625 290 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 PLGLAQ15195 96 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 Q6ZVU0 165 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 FAM58AQ8N1B3 248 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 DEFB126Q9BYW3 111 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 INSL6Q9Y581 213 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 A0A1B0GV50 99 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 GATMP50440 423 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 HNRNPKP61978 463 aaKnown RBP eCLIP12.48□□□□□ -0.41
COL6A3-202ENST00000347401 SPRED1Q7Z699 444 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 OR4K13Q8NH42 304 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 SAMD8Q96LT4 415 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF160Q9HCG1 818 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 NIT2Q9NQR4 276 aa12.48□□□□□ -0.41
COL6A3-202ENST00000347401 CHRNB4P30926 498 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SPINT3P49223 89 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 PAN3Q58A45 887 aaKnown RBP12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SLC35D3Q5M8T2 416 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR10Z1Q8NGY1 313 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR52N1Q8NH53 320 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SPOCK3Q9BQ16 436 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 BCAS3Q9H6U6 928 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 MPPED1O15442 326 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 GBAP04062 536 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 NAGAP17050 411 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 ETV5P41161 510 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 P2RX1P51575 399 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 HBA1P69905 142 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 TSPAN31Q12999 210 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 TXNRD3NBQ6F5E7 133 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR4N5Q8IXE1 308 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SYNPO2LQ9H987 977 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 PGGHGQ32M88 737 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF791Q3KP31 576 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-202ENST00000347401 CBLL1Q75N03 491 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 TRAPPC6BQ86SZ2 158 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR52B6Q8NGF0 335 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR52H1Q8NGJ2 320 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 IRF7Q92985 503 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 FBRSL1Q9HCM7 1045 aaKnown RBP12.47□□□□□ -0.41
COL6A3-202ENST00000347401 HRASLS2Q9NWW9 162 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 STEAP1Q9UHE8 339 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 MYOFQ9NZM1 2061 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SNRPGP15A8MWD9 76 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 HPNP05981 417 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 LCN6P62502 163 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 NXNL2Q5VZ03 156 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 ACOT7LQ6ZUV0 252 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SPATC1Q76KD6 591 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 TECPR1Q7Z6L1 1165 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 OR1F2PQ96R84 312 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SLC22A12Q96S37 553 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 HIF1ANQ9NWT6 349 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 PGAP2Q9UHJ9 254 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 FASLGP48023 281 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SLC14A1Q13336 389 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 IQCJQ1A5X6 159 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 SLC22A6Q4U2R8 563 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 GLOD5A6NK44 160 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 ANXA7P20073 488 aaKnown RBP12.47□□□□□ -0.41
COL6A3-202ENST00000347401 HTR1FP30939 366 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 MLLT10P55197 1068 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 CDKN2DP55273 166 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 CD81P60033 236 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 UBE2G2P60604 165 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 CST9LP1Q5W188 147 aa12.47□□□□□ -0.41
COL6A3-202ENST00000347401 FRMPD2BQ6IN97 320 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms