RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TIMP4Q99727 224 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PDCD1LG2Q9BQ51 273 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 IL21RQ9HBE5 538 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 EXOSC1Q9Y3B2 195 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 RFNGQ9Y644 331 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MMP9P14780 707 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BMPR1AP36894 532 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ECI1P42126 302 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARRB1P49407 418 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HENMT1Q5T8I9 393 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C8orf82Q6P1X6 216 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C5orf24Q7Z6I8 188 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CLEC14AQ86T13 490 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CCDC190Q86UF4 302 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FBXO16Q8IX29 292 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TOP6BLQ8N6T0 577 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR2L2Q8NH16 312 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A44Q96H78 314 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLITRK2Q9H156 845 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PORCNQ9H237 461 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C4orf47A7E2U8 309 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GYPBP06028 91 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ACTR1AP61163 376 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 EIF2B1Q14232 305 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 VAMP3Q15836 100 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LRRC26Q2I0M4 334 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PAGE3Q5JUK9 113 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 WDR73Q6P4I2 378 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FAM122BQ7Z309 247 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GPR149Q86SP6 731 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CLDN19Q8N6F1 224 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR4D10Q8NGI6 311 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 UFD1Q92890 307 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF385DQ9H6B1 395 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZDHHC6Q9H6R6 413 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FAM221AA4D161 298 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR7A17O14581 309 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FBP1P09467 338 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF30P17039 623 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 AKR1C4P17516 323 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PITPNBP48739 271 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NOVA1P51513 510 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TGFB2P61812 414 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ELFN2Q5R3F8 820 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NIPAL3Q6P499 406 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LYSMD2Q8IV50 215 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR8J2Q8NGG1 315 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ASB11Q8WXH4 323 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 COMMD4Q9H0A8 199 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TNFRSF12AQ9NP84 129 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TMPRSS11EQ9UL52 423 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PADI1Q9ULC6 663 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 WNT9AO14904 365 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NPC1O15118 1278 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FGF1P05230 155 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ATP6AP1LQ52LC2 224 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PAQR3Q6TCH7 311 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LILRA2Q8N149 483 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CSF3RQ99062 836 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ACOT7O00154 380 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HCKP08631 526 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PRPH2P23942 346 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ITPKBP27987 946 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MC3RP41968 323 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BRAT1Q6PJG6 821 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 B3GNT9Q6UX72 402 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 USP53Q70EK8 1073 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR1J4Q8NGS1 313 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM163Q8TC26 289 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC47A1Q96FL8 570 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BCO2Q9BYV7 579 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ACKR4Q9NPB9 350 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TRAV1-2A0A0B4J238 106 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CILPO75339 1184 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 UBL3O95164 117 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF888P0CJ79 500 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ETFAP13804 333 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PGFP49763 221 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CEACAM20Q6UY09 585 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CEACAM19Q7Z692 300 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 KLBQ86Z14 1044 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARFGAP1Q8N6T3 406 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF300Q96RE9 604 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BRF2Q9HAW0 419 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TERTO14746 1132 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SUV39H1O43463 412 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF623O75123 536 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 S1PR4O95977 384 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SCG5P05408 212 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TAS2R41P59536 307 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NFATC2Q13469 925 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CEACAM7Q14002 265 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LYRM7Q5U5X0 104 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BTNL3Q6UXE8 466 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CASP12Q6UXS9 341 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TMPRSS7Q7RTY8 843 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 WDTC1Q8N5D0 677 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HTR3CQ8WXA8 447 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TRMT61AQ96FX7 289 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SIGLEC11Q96RL6 698 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms