RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RNGTTO60942 597 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 HEXBP07686 556 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 FAM163BP0C2L3 166 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 MTHFD2P13995 350 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PSMB1P20618 241 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 EIF2DP41214 584 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 AFF3P51826 1226 aaKnown RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 LTBQ06643 244 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 NR0B2Q15466 257 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 BCL2A1Q16548 175 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PGGHGQ32M88 737 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 PXKQ7Z7A4 578 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 TMEM179BQ7Z7N9 219 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 LRRC28Q86X40 367 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 OR51D1Q8NGF3 324 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 ACOT11Q8WXI4 607 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 NKX3-1Q99801 234 aaPredicted RBP8.12□□□□□ -1.11
RTN3-202ENST00000339997 G6PC3Q9BUM1 346 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 LDAHQ9H6V9 325 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 CXorf36Q9H7Y0 433 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 DKKL1Q9UK85 242 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 NTNG1Q9Y2I2 539 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 INSL6Q9Y581 213 aa8.12□□□□□ -1.11
RTN3-202ENST00000339997 COL5A3P25940 1745 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 HRO43593 1189 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 CPNE6O95741 557 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 LCATP04180 440 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SERPINA2P20848 420 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PRAMEF8Q5VWM4 474 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PRAMEF7Q5VXH5 474 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 VASH1Q7L8A9 365 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 LILRB2Q8N423 598 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 HSD17B11Q8NBQ5 300 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 OR2A12Q8NGT7 310 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 TMEM163Q8TC26 289 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SLC2A12Q8TD20 617 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ASB11Q8WXH4 323 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 MRPL38Q96DV4 380 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 RRNAD1Q96FB5 475 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 LIN37Q96GY3 246 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 DEFB126Q9BYW3 111 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 C2orf42Q9NWW7 574 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 TAS2R8Q9NYW2 309 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PPP4R1LQ9P1A2 415 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 FLVCR2Q9UPI3 526 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ASB4Q9Y574 426 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ARHGEF15O94989 841 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 IFNA4P05014 189 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 NR2C1P13056 603 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ADARB1P78563 741 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 GPR139Q6DWJ6 353 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 BORCS7Q96B45 105 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SENP5Q96HI0 755 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 CRB3Q9BUF7 120 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SEMA4CQ9C0C4 833 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ASB6Q9NWX5 421 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SPTBP11277 2137 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 HEPACAM2A8MVW5 462 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 POLR1CO15160 346 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 ZNF623O75123 536 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 GPX5O75715 221 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 STK17BO94768 372 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 AKAIN1P0CW23 69 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ACP2P11117 423 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 RPS2P15880 293 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 SPNP16150 400 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 IL32P24001 234 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 RPS5P46782 204 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 TLE3Q04726 772 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SLC14A1Q13336 389 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ESCO2Q56NI9 601 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 MARCH8Q5T0T0 291 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SBSNQ6UWP8 590 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 CPT1CQ8TCG5 803 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 TMEM255BQ8WV15 326 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 RNF170Q96K19 258 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 HRASLS5Q96KN8 279 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PRRC1Q96M27 445 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 SFXN2Q96NB2 322 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ELOVL3Q9HB03 270 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 ATP13A2Q9NQ11 1180 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 NIT2Q9NQR4 276 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PURGQ9UJV8 347 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 DLEC1Q9Y238 1755 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 LRP5O75197 1615 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 EFCAB7A8K855 629 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 JUNDP17535 347 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 XCR1P46094 333 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PLEKHN1Q494U1 663 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 MRPL2Q5T653 305 aaKnown RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 SFXN4Q6P4A7 337 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 CNTN4Q8IWV2 1026 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PLPP7Q8NBV4 271 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 RLN3Q8WXF3 142 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 HOXB13Q92826 284 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 FOXRED1Q96CU9 486 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 PGAP3Q96FM1 320 aaPredicted RBP8.11□□□□□ -1.11
RTN3-202ENST00000339997 OR7D2Q96RA2 312 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PBDC1Q9BVG4 233 aa8.11□□□□□ -1.11
RTN3-202ENST00000339997 PRODH2Q9UF12 536 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms