RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ZNF407Q9C0G0 2248 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 MYO7BQ6PIF6 2116 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 ICE1Q9Y2F5 2266 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 DOPEY1Q5JWR5 2465 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 A0A0B4J2E0 115 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 CENPVL1A0A0U1RR11 272 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SMIM31A0A1B0GVY4 71 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 A0A1B0GX12 115 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SH3D21A4FU49 640 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 ALG1L2C9J202 215 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SMNDC1O75940 238 aaKnown RBP eCLIP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SMIM18P0DKX4 95 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 CCL3P10147 92 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 CRHBPP24387 322 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 POLR2IP36954 125 aaKnown RBP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 ACAA2P42765 397 aaKnown RBP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 MAD2L1BPQ15013 274 aaPredicted RBP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 PTGES3Q15185 160 aaKnown RBP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 FNDC7Q5VTL7 733 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 HMGN2P46Q86SG4 172 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SIAH3Q8IW03 269 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 ZNF614Q8N883 585 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 ST6GALNAC3Q8NDV1 305 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 PSD4Q8NDX1 1056 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 RHOXF1Q8NHV9 184 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 CNOT9Q92600 299 aaKnown RBP14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 Q96MT0 163 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC19A3Q9BZV2 496 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 LAT2Q9GZY6 243 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 PROK2Q9HC23 129 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SH2D2AQ9NP31 389 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 HPF1Q9NWY4 346 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC7A7Q9UM01 511 aa14.94□□□□□ -0.02
PDLIM1-201ENST00000329399 NPIPA5A0A0B4J1W7 369 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 CLDN24A6NM45 220 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 NPIPA7E9PJI5 369 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 GTPBP1O00178 669 aaKnown RBP14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 ZNF264O43296 627 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 FRS3O43559 492 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 ANGPTL1O95841 491 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 NPIPA8P0DM63 369 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 UBL4AP11441 157 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 CYP4B1P13584 511 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 CHMP24386 653 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 ABCD3P28288 659 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 OMPP47874 163 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 MEOX1P50221 254 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 CTBP2P56545 445 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 NNATQ16517 81 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 SLX4IPQ5VYV7 408 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 ZNF773Q6PK81 442 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 NUP54Q7Z3B4 507 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 P3H2Q8IVL5 708 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 DND1Q8IYX4 353 aaKnown RBP14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 PRR22Q8IZ63 422 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 TMEM178AQ8NBL3 297 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 TMEM239Q8WW34 195 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 OSTF1Q92882 214 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 EFHD2Q96C19 240 aaPredicted RBP14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 TMCO6Q96DC7 493 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 OMA1Q96E52 524 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 NPFFR2Q9Y5X5 522 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 CENPEQ02224 2701 aa14.93□□□□□ -0.02
PDLIM1-201ENST00000329399 DNAJC13O75165 2243 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 GTF3C1Q12789 2109 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 NPIPA5E9PKD4 350 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 PPM1BO75688 479 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 LINGO3P0C6S8 592 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 PNMTP11086 282 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 EDN3P14138 238 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 POU2F1P14859 743 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 HTR2AP28223 471 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 SMSP52788 366 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 SNRPGP62308 76 aaKnown RBP14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 PRKCDQ05655 676 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 INAQ16352 499 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC25A30Q5SVS4 291 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 WBP2NLQ6ICG8 309 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 CASP12Q6UXS9 341 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 OR10G3Q8NGC4 313 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 OR5M3Q8NGP4 307 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC22A8Q8TCC7 542 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 ADOQ96SZ5 270 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 PRSS27Q9BQR3 290 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 ZNF426Q9BUY5 554 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC25A19Q9HC21 320 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 NPIPA1Q9UND3 350 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 MED31Q9Y3C7 131 aa14.92□□□□□ -0.02
PDLIM1-201ENST00000329399 DPPA5A6NC42 116 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 H3BN98 237 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 SLC1A7O00341 560 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 CDK2AP1O14519 115 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 KLF4O43474 513 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 TFAP2AP05549 437 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 FBXO45P0C2W1 286 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 GKN3PP0CG01 181 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 FBXW4P57775 412 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 HSF1Q00613 529 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 BICRALQ6AI39 1079 aa14.91□□□□□ -0.02
PDLIM1-201ENST00000329399 LINC00114Q6XXX2 140 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms