RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RADILQ96JH8 1075 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 FAM71F1Q96KD3 344 aaPredicted RBP11.98□□□□□ -0.49
COL3A1-201ENST00000304636 PPT2Q9UMR5 302 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 MOKQ9UQ07 419 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 SLC22A7Q9Y694 548 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 AIFM1O95831 613 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 IFNA10P01566 189 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 PRDX1Q06830 199 aaKnown RBP11.98□□□□□ -0.49
COL3A1-201ENST00000304636 Q499Y3 187 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 MORN1Q5T089 497 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 LCN10Q6JVE6 187 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 THAP3Q8WTV1 239 aaPredicted RBP11.98□□□□□ -0.49
COL3A1-201ENST00000304636 P2RY12Q9H244 342 aa11.98□□□□□ -0.49
COL3A1-201ENST00000304636 MAST2Q6P0Q8 1798 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 HTR3AP46098 478 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 AQP6Q13520 282 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 GPR176Q14439 515 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 DUSP6Q16828 381 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ACTBL2Q562R1 376 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CMTM1Q8IZ96 169 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 DZANK1Q9NVP4 752 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 KCMF1Q9P0J7 381 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 A8MVJ9 347 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 PIP5K1CO60331 668 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 LDB3O75112 727 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CYBAP13498 195 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CPEP16870 476 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ZNF43P17038 809 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 AVPI1Q5T686 147 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 WDSUB1Q8N9V3 476 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 OR5K2Q8NHB8 316 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 RNF141Q8WVD5 230 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 TMEM43Q9BTV4 400 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CNTNAP3Q9BZ76 1288 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 LINC00597Q9H2U6 94 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 FBRSQ9HAH7 460 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ELOVL3Q9HB03 270 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SIDT1Q9NXL6 827 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 DDX60Q8IY21 1712 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 OR6C65A6NJZ3 312 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SOCS6O14544 535 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 DPM1O60762 260 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 PSMB5P28074 263 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CLDN6P56747 220 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 HHEXQ03014 270 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 MRPL49Q13405 166 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ZNF169Q14929 603 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 NSDHLQ15738 373 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 LDLRAD1Q5T700 205 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SPTSSAQ969W0 71 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ACER3Q9NUN7 267 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 TMPRSS11EQ9UL52 423 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 THEGLP0DJG4 465 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 AFF3P51826 1226 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 CLDN12P56749 244 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 PFN3P60673 137 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 FOXK2Q01167 660 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SPOCK1Q08629 439 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 C1orf61Q13536 156 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SYT14P1Q58G82 188 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 TMEM151BQ8IW70 566 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 OR14A2Q96R54 314 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SSX3Q99909 188 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SLC19A3Q9BZV2 496 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 HSFX1Q9UBD0 423 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 REV1Q9UBZ9 1251 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 RHBDD3Q9Y3P4 386 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 MMP2P08253 660 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 RPL34P49207 117 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SLC7A9P82251 487 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 TNK1Q13470 666 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 EXOSC7Q15024 291 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 HNRNPA1L2Q32P51 320 aaKnown RBP11.97□□□□□ -0.49
COL3A1-201ENST00000304636 FAM71E1Q6IPT2 247 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 TRAPPC6BQ86SZ2 158 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 ARL5BQ96KC2 179 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SLC25A37Q9NYZ2 338 aa11.97□□□□□ -0.49
COL3A1-201ENST00000304636 SLC16A7O60669 478 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 SYNGR4O95473 234 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 CCL5P13501 91 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 SLC19A1P41440 591 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 RUNX3Q13761 415 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 SMIM3Q9BZL3 60 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 NUMBLQ9Y6R0 609 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 A0A0J9YY10 115 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 TCRBV21S2A2A0A5A6 115 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 I6L893 689 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-201ENST00000304636 SBK3P0C264 359 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 CTSAP10619 480 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 HOXB9P17482 250 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-201ENST00000304636 MMP11P24347 488 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 TRIM23P36406 574 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 SOWAHCQ53LP3 525 aaPredicted RBP11.96□□□□□ -0.49
COL3A1-201ENST00000304636 YIF1BQ5BJH7 314 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 FAM26EQ8N5C1 309 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 OR6F1Q8NGZ6 308 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 NEURL2Q9BR09 285 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 CXCL16Q9H2A7 254 aa11.96□□□□□ -0.49
COL3A1-201ENST00000304636 APOBEC3BQ9UH17 382 aaKnown RBP11.96□□□□□ -0.49
COL3A1-201ENST00000304636 PKD1L3Q7Z443 1732 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms