RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FAM83HQ6ZRV2 1179 aaPredicted RBP14.29□□□□□ -0.12
SHH-201ENST00000297261 SYT9Q86SS6 491 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 DEFB119Q8N690 84 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 ZNF736B4DX44 427 aaPredicted RBP14.29□□□□□ -0.12
SHH-201ENST00000297261 TSPAN12O95859 305 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 CTSLP07711 333 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 PRR35P0CG20 571 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 AKAIN1P0CW23 69 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 CERS1P27544 350 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 OR1J4Q8NGS1 313 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 UBTD2Q8WUN7 234 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 PHB2Q99623 299 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 MAN2C1Q9NTJ4 1040 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 ASIC5Q9NY37 505 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 TVP23AA6NH52 213 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 K7ESM1 405 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 INHBBP09529 407 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 KCNJ5P48544 419 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 CTXN1P60606 82 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 DGCR2P98153 550 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 ARHGAP40Q5TG30 622 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 DGLUCYQ7Z3D6 616 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 TCTE3Q8IZS6 198 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 ARPC5LQ9BPX5 153 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 C20orf85Q9H1P6 137 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 LCMT2O60294 686 aaKnown RBP14.29□□□□□ -0.12
SHH-201ENST00000297261 C1orf105O95561 183 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 TSPAN15O95858 294 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 CLDN20P56880 219 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 LCN10Q6JVE6 187 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 ANGPTL6Q8NI99 470 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 TSACCQ96A04 125 aaPredicted RBP14.29□□□□□ -0.12
SHH-201ENST00000297261 LRRC46Q96FV0 321 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 WDR92Q96MX6 357 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 C1GALT1Q9NS00 363 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 THAP10Q9P2Z0 257 aaPredicted RBP14.29□□□□□ -0.12
SHH-201ENST00000297261 ZFC3H1O60293 1989 aaKnown RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 MN1Q10571 1320 aaPredicted RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 BORCS7-ASMTA0A0B4J1R7 106 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 B4DGG1 531 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 SNAPINO95295 136 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 CSF1P09603 554 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 PIPP12273 146 aaPredicted RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 SDHBP21912 280 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 PSMB5P28074 263 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 IL13RA1P78552 427 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 MRPS10P82664 201 aaKnown RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 IRF4Q15306 451 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 UQCC2Q9BRT2 126 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 TMEM38AQ9H6F2 299 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 ZNF701Q9NV72 531 aaPredicted RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 OR52A4PA6NMU1 304 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 TNFP01375 233 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 SYPP08247 313 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 SNRNP70P08621 437 aaKnown RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 EPHA5P54756 1037 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 TMEM35AQ53FP2 167 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 FAM209AQ5JX71 171 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 SLCO4C1Q6ZQN7 724 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 OR5T3Q8NGG3 340 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 OR13C2Q8NGS9 318 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 ZBTB8AQ96BR9 441 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 OR14A2Q96R54 314 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 PELOQ9BRX2 385 aaKnown RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 ATXN7L1Q9ULK2 861 aaPredicted RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 TRBV5-4A0A0C4DH59 114 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 TMEM129A0AVI4 362 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 ANXA7P20073 488 aaKnown RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 RAB3AP20336 220 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 SOX18P35713 384 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 CLDN2P57739 230 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 PFN3P60673 137 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 TMEM215Q68D42 235 aa14.28□□□□□ -0.12
SHH-201ENST00000297261 ZNF707Q96C28 371 aaPredicted RBP14.28□□□□□ -0.12
SHH-201ENST00000297261 KLK8O60259 260 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 PLGP00747 810 aaPredicted RBP14.27□□□□□ -0.12
SHH-201ENST00000297261 HLA-AP01891 365 aaKnown RBP14.27□□□□□ -0.12
SHH-201ENST00000297261 BLKP51451 505 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 DECR1Q16698 335 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ZNF542PQ5EBM4 170 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ZNF362Q5T0B9 420 aaPredicted RBP14.27□□□□□ -0.12
SHH-201ENST00000297261 TEX261Q6UWH6 196 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ASPGQ86U10 573 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ACOT4Q8N9L9 421 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 CDS1Q92903 461 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 OR8D2Q9GZM6 311 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 GPR34Q9UPC5 381 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 U3KQ87 197 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 MYO16Q9Y6X6 1858 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ZSWIM8A7E2V4 1837 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 APEHP13798 732 aaKnown RBP14.27□□□□□ -0.12
SHH-201ENST00000297261 GPR143P51810 404 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 FAM26EQ8N5C1 309 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 TP53I13Q8NBR0 393 aaPredicted RBP14.27□□□□□ -0.12
SHH-201ENST00000297261 GPR148Q8TDV2 347 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 ASB6Q9NWX5 421 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 FLVCR2Q9UPI3 526 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 SLC35A3Q9Y2D2 325 aa14.27□□□□□ -0.12
SHH-201ENST00000297261 CDHR4A6H8M9 788 aa14.27□□□□□ -0.13
SHH-201ENST00000297261 HCRTR2O43614 444 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms