RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FBXO48Q5FWF7 155 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PM20D1Q6GTS8 502 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MAMDC2Q7Z304 686 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 KCNA7Q96RP8 456 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 KATNB1Q9BVA0 655 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 BOLA1Q9Y3E2 137 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SNED1Q8TER0 1413 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NALCNQ8IZF0 1738 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF749O43361 778 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 AK4P27144 223 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FHITP49789 147 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SUMO1P63165 101 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SIRPAP78324 504 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ITPRIPL2Q3MIP1 535 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GPR157Q5UAW9 335 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 REC114Q7Z4M0 266 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR2L13Q8N349 312 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PRSS35Q8N3Z0 413 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DCAF4L2Q8NA75 395 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR5D14Q8NGL3 314 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLAMF9Q96A28 289 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MS4A4EQ96PG1 132 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RBM14Q96PK6 669 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DDX31Q9H8H2 851 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ST8SIA5O15466 376 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NDUFB6O95139 128 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 AKT2P31751 481 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 UGCGQ16739 394 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ADGRF1Q5T601 910 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ADAM5Q6NVV9 412 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FAM185AQ8N0U4 392 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FRMD1Q8N878 549 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MRGPRX2Q96LB1 330 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ATOH8Q96SQ7 321 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NPAS1Q99742 590 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PLK3Q9H4B4 646 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MIOXQ9UGB7 285 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GOLT1BQ9Y3E0 138 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RIPK3Q9Y572 518 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TP53I11O14683 189 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TBL1XO60907 577 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GPX5O75715 221 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CTSLP07711 333 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FBP1P09467 338 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GABRR2P28476 465 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SDHAP31040 664 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PSMB3P49720 205 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CAV2P51636 162 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NADSYN1Q6IA69 706 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC16A14Q7RTX9 510 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 BAGE3Q86Y29 109 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 BAGE2Q86Y30 109 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SIGLECL1Q8N7X8 197 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZDHHC22Q8N966 263 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 L3MBTL4Q8NA19 623 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 M1APQ8TC57 530 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TOE1Q96GM8 510 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR7D2Q96RA2 312 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MRPL22Q9NWU5 206 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 COPS7AQ9UBW8 275 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DDTLA6NHG4 134 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CLDN34H7C241 214 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NFATC2Q13469 925 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PDE7AQ13946 482 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SOWAHAQ2M3V2 549 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RIPPLY2Q5TAB7 128 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 BPIFB2Q8N4F0 458 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 HBEGFQ99075 208 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TBX5Q99593 518 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DLL4Q9NR61 685 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC23A1Q9UHI7 598 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NSG2Q9Y328 171 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PEX10O60683 326 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MMP10P09238 476 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DAOP14920 347 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MAP2K6P52564 334 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RABGGTBP53611 331 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FABP9Q0Z7S8 132 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 COL9A3Q14050 684 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 LRRC32Q14392 662 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 COL5A1-AS1Q5SY13 56 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 HEPHL1Q6MZM0 1159 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TMPRSS11FQ6ZWK6 438 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR6N2Q8NGY6 317 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NINJ1Q92982 152 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PSMG2Q969U7 264 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GMPPAQ96IJ6 420 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NECTIN4Q96NY8 510 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC35B3Q9H1N7 401 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CAPN10Q9HC96 672 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 POT1Q9NUX5 634 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC22A14Q9Y267 594 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PUS1Q9Y606 427 aaKnown RBP eCLIP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 DNMT3AQ9Y6K1 912 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TPST2O60704 377 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RHOP08100 348 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ALDOCP09972 364 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PIRTP0C851 137 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TSFMP43897 325 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC6A8P48029 635 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms