RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GNRHR2Q96P88 292 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 IP6K3Q96PC2 410 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 ANGPTL4Q9BY76 406 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 LHPPQ9H008 270 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 ADNPQ9H2P0 1102 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 EFCAB9A8MZ26 197 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 EFSO43281 561 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 WBP4O75554 376 aaKnown RBP18.25■□□□□ 0.51
CLN3-250ENST00000636839 PNMTP11086 282 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 PRKCAP17252 672 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 IL11P20809 199 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 CD96P40200 585 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 OC90Q02509 493 aaPredicted RBP18.25■□□□□ 0.51
CLN3-250ENST00000636839 C6orf141Q5SZD1 244 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 SLC30A6Q6NXT4 461 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 THSD4Q6ZMP0 1018 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 FER1L6-AS2Q96M78 137 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 JSRP1Q96MG2 331 aaPredicted RBP18.25■□□□□ 0.51
CLN3-250ENST00000636839 MOGAT1Q96PD6 335 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 TNFRSF13CQ96RJ3 184 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 IL4I1Q96RQ9 567 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 RHNO1Q9BSD3 238 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 MED17Q9NVC6 651 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 MYRFQ9Y2G1 1151 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 MPDZO75970 2070 aa18.25■□□□□ 0.51
CLN3-250ENST00000636839 XPNPEP2O43895 674 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 DNASE1L1P49184 302 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 MLLT10P55197 1068 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 GPR85P60893 370 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 LTBQ06643 244 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 SLX4IPQ5VYV7 408 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 JMJD6Q6NYC1 403 aaPredicted RBP18.24■□□□□ 0.51
CLN3-250ENST00000636839 CDK20Q8IZL9 346 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 OR4Q3Q8NH05 313 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 NXPE2Q96DL1 559 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 FRMD6Q96NE9 622 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 TSSK6Q9BXA6 273 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 OR11A1Q9GZK7 315 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 CPNE5Q9HCH3 593 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 IL20Q9NYY1 176 aa18.24■□□□□ 0.51
CLN3-250ENST00000636839 CPAMD8Q8IZJ3 1885 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 IGLV3-32A0A0A0MS00 114 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TMED7-TICAM2A0A0A6YYA0 188 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TMEM72A0PK05 275 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TNFAIP8O95379 198 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SMIM18P0DKX4 95 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 CXCR1P25024 350 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 CYB561P49447 251 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 HLCSP50747 726 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 CDK5Q00535 292 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 DBPQ10586 325 aaPredicted RBP18.23■□□□□ 0.51
CLN3-250ENST00000636839 FOXF1Q12946 379 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 RTL4Q6ZR62 310 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SLC46A3Q7Z3Q1 461 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 BCDIN3DQ7Z5W3 292 aaKnown RBP18.23■□□□□ 0.51
CLN3-250ENST00000636839 GALNT16Q8N428 558 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SETD9Q8NE22 299 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 BPIFB6Q8NFQ5 453 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 NTNG2Q96CW9 530 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SIGLEC12Q96PQ1 595 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 OR52D1Q9H346 318 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 ZNF696Q9H7X3 374 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 KRCC1Q9NPI7 259 aaPredicted RBP18.23■□□□□ 0.51
CLN3-250ENST00000636839 SDHAF3Q9NRP4 125 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TVP23BQ9NYZ1 205 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 ENOPH1Q9UHY7 261 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 WASF3Q9UPY6 502 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SIGLEC7Q9Y286 467 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TMED7Q9Y3B3 224 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 EFNA2O43921 213 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 PTP4A3O75365 173 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 GABRB1P18505 474 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 PIGFQ07326 219 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SNTA1Q13424 505 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 ABHD17BQ5VST6 288 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 C12orf73Q69YU5 71 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 GRINAQ7Z429 371 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 ATP6V1C2Q8NEY4 427 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 RHOXF1Q8NHV9 184 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TAAR8Q969N4 342 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SGTBQ96EQ0 304 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 SGCZQ96LD1 299 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 AMBNQ9NP70 447 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 DEPPQ9NTK1 212 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 TBC1D23Q9NUY8 699 aa18.23■□□□□ 0.51
CLN3-250ENST00000636839 MED12Q93074 2177 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 SUSD5O60279 629 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 WDPCPO95876 746 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 OPN1LWP04000 364 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 ATP6V1B1P15313 513 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 RPS5P46782 204 aaKnown RBP18.22■□□□□ 0.51
CLN3-250ENST00000636839 POLR2HP52434 150 aaKnown RBP18.22■□□□□ 0.51
CLN3-250ENST00000636839 OAFQ86UD1 273 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 FADS6Q8N9I5 356 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 PSD4Q8NDX1 1056 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TEX47Q8TBZ9 253 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 POC1BQ8TC44 478 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 FANK1Q8TC84 345 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 SECISBP2Q96T21 854 aaKnown RBP18.22■□□□□ 0.51
CLN3-250ENST00000636839 HES7Q9BYE0 225 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms