RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 CLTBP09497 229 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 ERGP11308 486 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 CLDN2P57739 230 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 ERVFC1P60507 584 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 RPS11P62280 158 aaKnown RBP eCLIP13.05□□□□□ -0.32
LDB3-209ENST00000623056 RAB33AQ14088 237 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 HES5Q5TA89 166 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 ZC3H14Q6PJT7 736 aaKnown RBP13.05□□□□□ -0.32
LDB3-209ENST00000623056 WDR88Q6ZMY6 472 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 OR52B4Q8NGK2 314 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 FCAMRQ8WWV6 532 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 PNPLA2Q96AD5 504 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 SMIM19Q96E16 107 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 SLC38A3Q99624 504 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 FXYD6Q9H0Q3 95 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 SAV1Q9H4B6 383 aaPredicted RBP13.05□□□□□ -0.32
LDB3-209ENST00000623056 EVA1AQ9H8M9 152 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 NRIP3Q9NQ35 241 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 ATG4BQ9Y4P1 393 aa13.05□□□□□ -0.32
LDB3-209ENST00000623056 HEATR5BQ9P2D3 2071 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 SIGLEC5O15389 551 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OGG1O15527 345 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 PCDH8O95206 1070 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 PAPLNO95428 1278 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 SIX6O95475 246 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CBX7O95931 251 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 SOD2P04179 222 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 IL5P05113 134 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 GYPBP06028 91 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 HCCSP53701 268 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 SIGLEC14Q08ET2 396 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 MELKQ14680 651 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 SLC9A5Q14940 896 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 UBXN2BQ14CS0 331 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CDK5R1Q15078 307 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 PUS10Q3MIT2 529 aaKnown RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 HEPHL1Q6MZM0 1159 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 PARS2Q7L3T8 475 aaKnown RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 CYB561A3Q8NBI2 242 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OR5M9Q8NGP3 310 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OR9A2Q8NGT5 310 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 SP7Q8TDD2 431 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 TFGQ92734 400 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 MACROD1Q9BQ69 325 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 UTP23Q9BRU9 249 aaKnown RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 SLC6A20Q9NP91 592 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 HPF1Q9NWY4 346 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ANKRD10Q9NXR5 420 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 MED11Q9P086 117 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OPN4Q9UHM6 478 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CCL26Q9Y258 94 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 KLF2Q9Y5W3 355 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 MDC1Q14676 2089 aaKnown RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 LRIT2A6NDA9 550 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 C4orf51C9J302 202 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 NDUFB6O95139 128 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 PTHLHP12272 177 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 DCTDP32321 178 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 GPR1P46091 355 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CAPZA2P47755 286 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ACTC1P68032 377 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ACTA1P68133 377 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OC90Q02509 493 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 CRMP1Q14194 572 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ZNF660Q6AZW8 331 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 ZNF836Q6ZNA1 936 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 FRRS1Q6ZNA5 592 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CDH26Q8IXH8 852 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 EID2Q8N6I1 236 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 OR5M1Q8NGP8 315 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ZDHHC1Q8WTX9 485 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 ATOH1Q92858 354 aaPredicted RBP13.04□□□□□ -0.32
LDB3-209ENST00000623056 SLC35A4Q96G79 324 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 MRGPRX3Q96LB0 322 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 GFI1Q99684 422 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 CLDND1Q9NY35 253 aa13.04□□□□□ -0.32
LDB3-209ENST00000623056 A0A1W2PPV9 198 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 A0A1W2PRU2 124 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 FAM74A7A6NL05 159 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 RIIAD1A6NNX1 92 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 ABCD4O14678 606 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 CLEC3AO75596 197 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 AIFM1O95831 613 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 HPP00738 406 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 PTH2RP49190 550 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 MECP2P51608 486 aaKnown RBP13.03□□□□□ -0.32
LDB3-209ENST00000623056 ZNF136P52737 540 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 DLX5P56178 289 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 H2BFSP57053 126 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 CSNK1G2P78368 415 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 MAT1AQ00266 395 aaKnown RBP13.03□□□□□ -0.32
LDB3-209ENST00000623056 FLI1Q01543 452 aaPredicted RBP13.03□□□□□ -0.32
LDB3-209ENST00000623056 ARHGAP19Q14CB8 494 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 C2orf68Q2NKX9 166 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 FAM74A3Q4VXF1 159 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 C18orf63Q68DL7 685 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 OR13C2Q8NGS9 318 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 ORAI1Q96D31 301 aa13.03□□□□□ -0.32
LDB3-209ENST00000623056 PELI1Q96FA3 418 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms