RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GABRA5P31644 462 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SKP1P63208 163 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 FUT7Q11130 342 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 FGFBP1Q14512 234 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZNF79Q15937 498 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ARL9Q6T311 187 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 LYPD4Q6UWN0 246 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SSX6Q7RTT6 188 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SLC35F3Q8IY50 421 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CELF2-AS1Q8N7Q2 184 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZSCAN1Q8NBB4 408 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 OR1L3Q8NH93 324 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 C1orf216Q8TAB5 229 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 PHOSPHO1Q8TCT1 267 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 HOXB13Q92826 284 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZDHHC12Q96GR4 267 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 MSANTD3Q96H12 275 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 DIRAS2Q96HU8 199 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 RTN4RQ9BZR6 473 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 PPIL3Q9H2H8 161 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 MIXL1Q9H2W2 232 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CMC2Q9NRP2 79 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 MED17Q9NVC6 651 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZNF346Q9UL40 294 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 GRIP1Q9Y3R0 1128 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IER3IP1Q9Y5U9 82 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 V9GYH0 126 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 A0A1W2PPK0 400 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SERINC4A6NH21 518 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SAGE2PA6NJ88 616 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 J3QLW9 94 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 GABRPO00591 440 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 FMO6PO60774 539 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZNF19P17023 458 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 RPL4P36578 427 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 ACVR1BP36896 505 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 NAA10P41227 235 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 TMED10P49755 219 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 HSD17B7P56937 341 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 OR12D2P58182 307 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 PSPHP78330 225 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 SLC3A1Q07837 685 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 GRM7Q14831 915 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 TUBA3EQ6PEY2 450 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 FAM131AQ6UXB0 335 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CCBE1Q6UXH8 406 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 QSOX2Q6ZRP7 698 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 FAM98AQ8NCA5 519 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 NEIL3Q8TAT5 605 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZPLD1Q8TCW7 415 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 TRIM2Q9C040 744 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 LANCL2Q9NS86 450 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 A0A075B6Q4 140 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IGHV1OR21-1A0A087WYE8 117 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IRGMA1A4Y4 181 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 RIIAD1A6NNX1 92 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 NPIPB9F8W1W9 429 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 BLOC1S5-TXNDC5H3BN57 136 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ZNF749O43361 778 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 AKAP8O43823 692 aaKnown RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 HCN1O60741 890 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 WISP1O95388 367 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CSF2RBP32927 897 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 NUDT1P36639 197 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 RAB15P59190 212 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 COPZ1P61923 177 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IGLV3-21P80748 117 aaPredicted RBP9.75□□□□□ -0.85
CUX1-221ENST00000622516 E2F1Q01094 437 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 ULK3Q6PHR2 472 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 RTL4Q6ZR62 310 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 C10orf53Q8N6V4 93 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CLDN22Q8N7P3 220 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 HLA-CQ95604 372 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 NEDD4LQ96PU5 975 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 NMNAT3Q96T66 252 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 G6PC3Q9BUM1 346 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 CMAHPQ9Y471 501 aa9.75□□□□□ -0.85
CUX1-221ENST00000622516 IGHV3-20A0A0C4DH32 117 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 J3QRE1 110 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 PSMD9O00233 223 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 KHNYNO15037 678 aaKnown RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 POU3F3P20264 500 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 CTBP2P56545 445 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ZNF141Q15928 474 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 C17orf82Q86X59 251 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 C17orf47Q8NEP4 570 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 CADM4Q8NFZ8 388 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ZNF285Q96NJ3 590 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 NUDT22Q9BRQ3 303 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ZNF304Q9HCX3 659 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 PRDM6Q9NQX0 595 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 C14orf105Q9NVL8 296 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ATXN7L1Q9ULK2 861 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 GSTK1Q9Y2Q3 226 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 MRPS17Q9Y2R5 130 aaKnown RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 MED12Q93074 2177 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 TP53BP1Q12888 1972 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 A0A1B0GVC2 190 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 CCDC182A6NF36 153 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms