RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ATP6V1C2Q8NEY4 427 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 CADM4Q8NFZ8 388 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 C1orf216Q8TAB5 229 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 ZMYND19Q96E35 227 aaPredicted RBP11.4□□□□□ -0.59
CIITA-212ENST00000618207 TEAD3Q99594 435 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 SACM1LQ9NTJ5 587 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 MUTYHQ9UIF7 546 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 SF3B6Q9Y3B4 125 aaKnown RBP11.4□□□□□ -0.59
CIITA-212ENST00000618207 IER3IP1Q9Y5U9 82 aa11.4□□□□□ -0.59
CIITA-212ENST00000618207 SIRT4Q9Y6E7 314 aaPredicted RBP11.4□□□□□ -0.59
CIITA-212ENST00000618207 A0A1W2PQL4 384 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 MCIDASD6RGH6 385 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 E9PI62 339 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 J3QLW9 94 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 GTPBP1O00178 669 aaKnown RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 HCN1O60741 890 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 SOX30O94993 753 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ZNF19P17023 458 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 CXCL12P48061 93 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 DHPSP49366 369 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 ZNF45Q02386 682 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 FAM27D1Q5T7N8 215 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ARL9Q6T311 187 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 LYPD4Q6UWN0 246 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 TMPRSS11AQ6ZMR5 421 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 LINC00299Q6ZSB3 139 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 TMPRSS11FQ6ZWK6 438 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 RFLNBQ8N5W9 214 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 DTX3Q8N9I9 347 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ITPKCQ96DU7 683 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 DEPDC7Q96QD5 511 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 G6PC3Q9BUM1 346 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 TRIM2Q9C040 744 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 MCCC2Q9HCC0 563 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 MRPS18AQ9NVS2 196 aaKnown RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 MKL2Q9ULH7 1088 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 COLQQ9Y215 455 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 SHISA3A0PJX4 238 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 PSMD9O00233 223 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 B3GALNT1O75752 331 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 HIST1H1CP16403 213 aaKnown RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 ACVR1BP36896 505 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 AFF3P51826 1226 aaKnown RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 HSD11B2P80365 405 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 SLC3A1Q07837 685 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 FUT7Q11130 342 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ULK3Q6PHR2 472 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ZNF322Q6U7Q0 402 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 SPEM1Q8N4L4 309 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 THAP3Q8WTV1 239 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 ASB15Q8WXK1 588 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ZNF524Q96C55 264 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 NEURL2Q9BR09 285 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 ZNF649Q9BS31 505 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 KATNB1Q9BVA0 655 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 LANCL2Q9NS86 450 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 C14orf105Q9NVL8 296 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 CRNNQ9UBG3 495 aaPredicted RBP11.39□□□□□ -0.59
CIITA-212ENST00000618207 GRIP1Q9Y3R0 1128 aa11.39□□□□□ -0.59
CIITA-212ENST00000618207 A0A1W2PPK0 400 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 IRGMA1A4Y4 181 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 TAF4O00268 1085 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 NUDT14O95848 222 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 GRPRP30550 384 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 NR0B1P51843 470 aaKnown RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 TPBGQ13641 420 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 ARHGAP40Q5TG30 622 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 C16orf47Q6ZP98 133 aaPredicted RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 LANCL3Q6ZV70 420 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 ZNF550Q7Z398 422 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 CCDC190Q86UF4 302 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 FAM174AQ8TBP5 190 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 SUN5Q8TC36 379 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 DIRAS2Q96HU8 199 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 SHDQ96IW2 340 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 NDC1Q9BTX1 674 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 RTN4RQ9BZR6 473 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 MKKSQ9NPJ1 570 aaPredicted RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 CMC2Q9NRP2 79 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 MED17Q9NVC6 651 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 ZNF346Q9UL40 294 aaKnown RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 TMEM5Q9Y2B1 443 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 GSTK1Q9Y2Q3 226 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 LOC105371267A0A1B0GV96 52 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 GABRPO00591 440 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 DUX1O43812 170 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 AKAP8O43823 692 aaKnown RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 FMO6PO60774 539 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 ZNF3P17036 446 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 SLC37A1P57057 533 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 OR12D2P58182 307 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 STARD6P59095 220 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 IGLV3-21P80748 117 aaPredicted RBP11.38□□□□□ -0.59
CIITA-212ENST00000618207 FAM131AQ6UXB0 335 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 GDPGP1Q6ZNW5 385 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 RTL4Q6ZR62 310 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 NEIL3Q8TAT5 605 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 SLC25A46Q96AG3 418 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 RASD2Q96D21 266 aa11.38□□□□□ -0.59
CIITA-212ENST00000618207 SDHCQ99643 169 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms