RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TTC3P53804 2025 aa13.06□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM269A0A1B0GVZ9 245 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 A6NIZ1 184 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 PLPP1O14494 284 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SERPINA5P05154 406 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ITGB8P26012 769 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 RAP1BP61224 184 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 RAP1AP62834 184 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 POU4F3Q15319 338 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SLC22A6Q4U2R8 563 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 WBP2NLQ6ICG8 309 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 RNF113BQ8IZP6 322 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 CLDN22Q8N7P3 220 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 OR14L1PQ8NHC6 308 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 STRADBQ9C0K7 418 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 FN3KQ9H479 309 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ELOVL3Q9HB03 270 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 MED17Q9NVC6 651 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SPATA6Q9NWH7 488 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 PLEK2Q9NYT0 353 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 REV1Q9UBZ9 1251 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SLC6A5Q9Y345 797 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 AHDC1Q5TGY3 1603 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SOCS6O14544 535 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 MAKP20794 623 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 OTX2P32243 289 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 TNFRSF17Q02223 184 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SOWAHCQ53LP3 525 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 GPR139Q6DWJ6 353 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 APOOLQ6UXV4 268 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 CD163Q86VB7 1156 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 RBM45Q8IUH3 476 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 OR51T1Q8NGJ9 327 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 KCTD12Q96CX2 325 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF419Q96HQ0 510 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 HHIPQ96QV1 700 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 GON7Q9BXV9 100 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 LMAN1LQ9HAT1 526 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF160Q9HCG1 818 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ASIC5Q9NY37 505 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 DIMT1Q9UNQ2 313 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF175Q9Y473 711 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 PCDHGA6Q9Y5G7 932 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 A0A1B0GUL6 1792 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 METTL15A6NJ78 407 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 IFNA2P01563 188 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 CSNK1G2P78368 415 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 USF2Q15853 346 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 TANGO2Q6ICL3 276 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 RPL22L1Q6P5R6 122 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ZSCAN1Q8NBB4 408 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 MFSD9Q8NBP5 474 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ST6GALNAC5Q9BVH7 336 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 HHATLQ9HCP6 504 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 TAAR2Q9P1P5 351 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 GLS2Q9UI32 602 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 A0A1B0GTL3 188 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 OR2A25A4D2G3 310 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SULT2B1O00204 365 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 MMP11P24347 488 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 VASPP50552 380 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 DAP3P51398 398 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SELENOVP59797 346 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 IL13RA1P78552 427 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 MALLQ13021 153 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SLX4IPQ5VYV7 408 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 METAP1DQ6UB28 335 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 C3P1Q6ZMU1 363 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 SLC35F3Q8IY50 421 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 BOLLQ8N9W6 283 aaKnown RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 DCUN1D4Q92564 292 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 ASF1BQ9NVP2 202 aa13.05□□□□□ -0.32
CPSF1-212ENST00000616140 VSX1Q9NZR4 365 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-212ENST00000616140 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 F8W036 122 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 SYT5O00445 386 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 CAV2P51636 162 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 BLOC1S1P78537 153 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 POU3F1Q03052 451 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 ABHD17CQ6PCB6 329 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 MBOAT2Q6ZWT7 520 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 SLC35D2Q76EJ3 337 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 WBP2Q969T9 261 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF649Q9BS31 505 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 EPHX3Q9H6B9 360 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 PGAP2Q9UHJ9 254 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF281Q9Y2X9 895 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 GGT3PA6NGU5 568 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 VSTM5A8MXK1 200 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 TARM1B6A8C7 271 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 I6L893 689 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 DVL2O14641 736 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 DLSTP36957 453 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 RPS5P46782 204 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 CAMLGP49069 296 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 LBX1P52954 281 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 RPS15P62841 145 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 SIRPAP78324 504 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 MAT1AQ00266 395 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms