RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TTC25Q96NG3 672 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PSKH2Q96QS6 385 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 ZSCAN5AQ9BUG6 496 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SLC39A8Q9C0K1 460 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 BLZF1Q9H2G9 400 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 FN3KQ9H479 309 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 LRRC19Q9H756 370 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 AAMDCQ9H7C9 122 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 GPN1Q9HCN4 374 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 MMP25Q9NPA2 562 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 ACP6Q9NPH0 428 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 FAM212BQ9NTI7 297 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SPHK1Q9NYA1 384 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SLCO1C1Q9NYB5 712 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 OR6C3Q9NZP0 311 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PDP1Q9P0J1 537 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 C19orf25Q9UFG5 118 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 UTS2RQ9UKP6 389 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 DNPEPQ9ULA0 475 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SNX6Q9UNH7 406 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SNRNP200O75643 2136 aaKnown RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 DNAH9Q9NYC9 4486 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 STAB2Q8WWQ8 2551 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 FREM3P0C091 2139 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 LCE6AA0A183 80 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 OR2AG2A6NM03 316 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 G3V4G9 280 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 M0QZ24 198 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 DFFAO00273 331 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CALUO43852 315 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 STX10O60499 249 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 HCN1O60741 890 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 NME6O75414 186 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 RAD51DO75771 328 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GLSO94925 669 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CGAP01215 116 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 THRBP10828 461 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TPSB2P20231 275 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 MAGP20916 626 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 ROR2Q01974 943 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GCNT1Q02742 428 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SLC18A2Q05940 514 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 KIF5AQ12840 1032 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 NAE1Q13564 534 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 RFTN1Q14699 578 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SLC10A1Q14973 349 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TPSAB1Q15661 275 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 NRF1Q16656 503 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CA9Q16790 459 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SYT16Q17RD7 645 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 PTPN20Q4JDL3 420 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 FAM98BQ52LJ0 330 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 KLHL26Q53HC5 615 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SGO1Q5FBB7 561 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 ARL13AQ5H913 290 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 BEX5Q5H9J7 111 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TCTE1Q5JU00 501 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 FNBP1LQ5T0N5 605 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 NDUFAF5Q5TEU4 345 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 LRRC8EQ6NSJ5 796 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TRNP1Q6NT89 227 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 PAPD4Q6PIY7 484 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM220Q6QAJ8 160 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 BNIPLQ7Z465 357 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 EGFL6Q8IUX8 553 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CDH26Q8IXH8 852 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 ZCCHC7Q8N3Z6 543 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TRAM1L1Q8N609 369 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM156Q8N614 296 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CCDC185Q8N715 623 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GPR26Q8NDV2 337 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 OR4N2Q8NGD1 307 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 RNASE8Q8TDE3 154 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SMAP2Q8WU79 429 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 PROX1Q92786 737 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 FBXL8Q96CD0 374 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GIMAP5Q96F15 307 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 EGLN2Q96KS0 407 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GSDMAQ96QA5 445 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 FEVQ99581 238 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SEPHS2Q99611 448 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SELENOSQ9BQE4 189 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 C11orf70Q9BRQ4 267 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 POLR1EQ9GZS1 481 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 SLITRK2Q9H156 845 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 MAGIXQ9H6Y5 334 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 GORASP2Q9H8Y8 452 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 LRRC40Q9H9A6 602 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF556Q9HAH1 456 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 PALMDQ9NP74 551 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 MKKSQ9NPJ1 570 aaPredicted RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 DDX18Q9NVP1 670 aaKnown RBP3.79□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM51Q9NW97 253 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 UBQLN2Q9UHD9 624 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 JRKLQ9Y4A0 524 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 HEBP2Q9Y5Z4 205 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 CLIC4Q9Y696 253 aa3.79□□□□□ -1.8
LINC00540-201ENST00000611481 DOCK7Q96N67 2140 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms