RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ARHGDIGQ99819 225 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 CACYBPQ9HB71 228 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 MRPS23Q9Y3D9 190 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 KIF26AQ9ULI4 1882 aaPredicted RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 A0A0A6YYD5 115 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 PDCD5O14737 125 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 IL32P24001 234 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 EDNRAP25101 427 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 ANXA11P50995 505 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 DECR1Q16698 335 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 ZNF658BQ4V348 819 aaPredicted RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 STPG1Q5TH74 334 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 HEPHL1Q6MZM0 1159 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 ZC3H14Q6PJT7 736 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 LSM14AQ8ND56 463 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 OR5M1Q8NGP8 315 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 C1orf216Q8TAB5 229 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 HS6ST2Q96MM7 605 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 C1QTNF2Q9BXJ5 285 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 TRBV2A0A0J9YWF9 115 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 A0A1B0GVT2 93 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 NFYAP23511 347 aaPredicted RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 AKR1D1P51857 326 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 RPS15P62841 145 aaKnown RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 MAPK14Q16539 360 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 FIGNL1Q6PIW4 674 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ZNF836Q6ZNA1 936 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SNX33Q8WV41 574 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ARRDC3Q96B67 414 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PPP1R16AQ96I34 528 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SARGQ9BW04 601 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SYNPO2LQ9H987 977 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ZNF443Q9Y2A4 671 aaPredicted RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 OR1A2Q9Y585 309 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 IGKV1-8A0A0C4DH67 115 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PEX12O00623 359 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SPINT1O43278 529 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 RPP14O95059 124 aaKnown RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 NMBP08949 121 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ADH5P11766 374 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SOX2P48431 317 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 TMEM240Q5SV17 173 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 SLC22A10Q63ZE4 541 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 TMEFF1Q8IYR6 380 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 OR8K3Q8NH51 312 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ZNF707Q96C28 371 aaPredicted RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 ELP4Q96EB1 424 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 REG4Q9BYZ8 158 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 COPZ2Q9P299 210 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PFDN2Q9UHV9 154 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 EMC8O43402 210 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PLPP2O43688 288 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 ST8SIA6P61647 398 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 BTN3A2P78410 334 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 REEP5Q00765 189 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 TMEM44Q2T9K0 475 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 FAM74A1Q5RGS3 127 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 FAM98AQ8NCA5 519 aaKnown RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 DNAAF1Q8NEP3 725 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 OR4C6Q8NH72 309 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 AHCYL2Q96HN2 611 aaKnown RBP16.95■□□□□ 0.3
UPF1-210ENST00000600689 NOX4Q9NPH5 578 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PRDM9Q9NQV7 894 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 PCDHGA5Q9Y5G8 931 aa16.95■□□□□ 0.3
UPF1-210ENST00000600689 LRRK1Q38SD2 2015 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 RIIAD1A6NNX1 92 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 J3QRE1 110 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 STX11O75558 287 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 SLC35G4P0C7Q5 338 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 HIST1H1TP22492 207 aaPredicted RBP16.94■□□□□ 0.3
UPF1-210ENST00000600689 NHLRC3Q5JS37 347 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 C11orf88Q6PI97 169 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 UBE2Q1Q7Z7E8 422 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR56A1Q8NGH5 318 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR52H1Q8NGJ2 320 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 ZCCHC10Q8TBK6 192 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 LIN7BQ9HAP6 207 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 TMEM138Q9NPI0 162 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 GPR160Q9UJ42 338 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 PLEKHM1Q9Y4G2 1056 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 A0A1W2PPV9 198 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 LINC01553A4QN01 128 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR6C74A6NCV1 312 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 ZNF860A6NHJ4 632 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 IFNA16P05015 189 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 MPIP34949 423 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 STX4Q12846 297 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 C2orf68Q2NKX9 166 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 LRFN4Q6PJG9 635 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 KCT2Q8NC54 265 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR7G2Q8NG99 324 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR52E2Q8NGJ4 325 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 OR6K6Q8NGW6 343 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 TMEM239Q8WW34 195 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 ADGRL4Q9HBW9 690 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 PTTG3PQ9NZH4 202 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 PIPOXQ9P0Z9 390 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 HRH3Q9Y5N1 445 aa16.94■□□□□ 0.3
UPF1-210ENST00000600689 TSPAN11A1L157 253 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 PAPLNO95428 1278 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms