RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ARHGAP11BQ3KRB8 267 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 FAM174BQ3ZCQ3 159 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 C6orf52Q5T4I8 152 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 SAXO2Q658L1 398 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 BHLHB9Q6PI77 547 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.05□□□□□ -0.64
TRIM28-212ENST00000597995 KIRREL3Q8IZU9 778 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 ATP6V1C2Q8NEY4 427 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 TOR1AIP2Q8NFQ8 470 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 OR5W2Q8NH69 310 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF75CPQ92670 426 aaPredicted RBP11.05□□□□□ -0.64
TRIM28-212ENST00000597995 SLC35G5Q96KT7 338 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF350Q9GZX5 532 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 OR51I1Q9H343 314 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 TMEM160Q9NX00 188 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 PLCE1Q9P212 2302 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 CDC42EP3Q9UKI2 254 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 MGAT4BQ9UQ53 548 aa11.05□□□□□ -0.64
TRIM28-212ENST00000597995 IGHV4-30-2A0A087WSY4 118 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 A0A1W2PNR3 127 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 OR5H1A6NKK0 313 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ELOA3DA6NLF2 546 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 E9PBE3 544 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ABCD4O14678 606 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 SMAD9O15198 467 aaKnown RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF264O43296 627 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 GPRIN2O60269 458 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 DNAJA2O60884 412 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 BCAS1O75363 584 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 UGT2B17O75795 530 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 UQCRC2P22695 453 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 TTKP33981 857 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CDKN2CP42773 168 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 NUDT6P53370 316 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 PLAURQ03405 335 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 LOXL1Q08397 574 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CBFBQ13951 182 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 PDK3Q15120 406 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 QPRTQ15274 297 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 GPR68Q15743 365 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF141Q15928 474 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ELOA3BQ3SY89 546 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 SLC9B1Q4ZJI4 515 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 PDZK1Q5T2W1 519 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ANXA8L1Q5VT79 327 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 AP1ARQ63HQ0 302 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 C3orf33Q6P1S2 294 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 TNFAIP8L2Q6P589 184 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CLEC2AQ6UVW9 174 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 TMEM108Q6UXF1 575 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 SPATA19Q7Z5L4 167 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 GALNT5Q7Z7M9 940 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 LSRQ86X29 649 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF100Q8IYN0 542 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF433Q8N7K0 673 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ELOA3Q8NG57 546 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 RAB8BQ92930 207 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZG16BQ96DA0 208 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 NEURL3Q96EH8 262 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 MAELQ96JY0 434 aaKnown RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CCDC115Q96NT0 180 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF300Q96RE9 604 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-212ENST00000597995 TNFRSF13CQ96RJ3 184 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 DHRS9Q9BPW9 319 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 INPP5KQ9BT40 448 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 NMUR2Q9GZQ4 415 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 MANSC1Q9H8J5 431 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CBLN4Q9NTU7 201 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 NPAP1Q9NZP6 1156 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 BTNL2Q9UIR0 455 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 MKLN1Q9UL63 735 aa11.04□□□□□ -0.64
TRIM28-212ENST00000597995 CUBNO60494 3623 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 IGKV3D-15A0A087WSY6 115 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 FAM234BA2RU67 622 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 SERINC4A6NH21 518 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 DUXAA6NLW8 204 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 E7EQL1 145 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 PHF1O43189 567 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-212ENST00000597995 ERLIN1O75477 346 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 STX11O75558 287 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 F12P00748 615 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-212ENST00000597995 UBL4AP11441 157 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 SLC25A16P16260 332 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 PTAFRP25105 342 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 S100A3P33764 101 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 CLNS1AP54105 237 aaKnown RBP11.03□□□□□ -0.64
TRIM28-212ENST00000597995 IRX1P78414 480 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-212ENST00000597995 VLDLRP98155 873 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 SKP2Q13309 424 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 TMEM249Q2WGJ8 235 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 FBXW9Q5XUX1 488 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 ATG16L1Q676U5 607 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 TYW3Q6IPR3 259 aaKnown RBP11.03□□□□□ -0.64
TRIM28-212ENST00000597995 C11orf71Q6IPW1 123 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 TMPPEQ6ZT21 453 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 ZNF614Q8N883 585 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 XAGE5Q8WWM1 108 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 ST8SIA1Q92185 356 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 OR5B2Q96R09 309 aa11.03□□□□□ -0.64
TRIM28-212ENST00000597995 OR52B2Q96RD2 323 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms