RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 VCPKMTQ9H867 229 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 PLGRKTQ9HBL7 147 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 HPF1Q9NWY4 346 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 AATFQ9NY61 560 aaKnown RBP eCLIP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 MTRF1LQ9UGC7 380 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 KIF25Q9UIL4 384 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 ZNF225Q9UK10 706 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 NPIPA1Q9UND3 350 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 NEUROG3Q9Y4Z2 214 aa2.89□□□□□ -1.95
SMCHD1-204ENST00000581226 IGHV3OR16-13A0A075B7E8 117 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 TRBV6-6A0A0A6YYG2 114 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 A6NDX4 124 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 GJE1A6NN92 205 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 P04436 131 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 ATP6V1B2P21281 511 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 DAP3P51398 398 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 POLR2FP61218 127 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 SELENOTP62341 195 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 CNTN2Q02246 1040 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 TGFBR3Q03167 851 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 TATDN3Q17R31 274 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 GGTA1PQ4G0N0 100 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 KLF17Q5JT82 389 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 AGBL2Q5U5Z8 902 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 KCNIP4Q6PIL6 250 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 PNKDQ8N490 385 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 Q8N9W7 124 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 OSTF1Q92882 214 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 RASL11BQ9BPW5 248 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 SIGLEC8Q9NYZ4 499 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 PRG3Q9Y2Y8 225 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 OR10H1Q9Y4A9 318 aa2.88□□□□□ -1.95
SMCHD1-204ENST00000581226 IGLV3-16A0A075B6K0 115 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 A8MUI8 341 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 HCRTR1O43613 425 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 OR10H3O60404 316 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 LGI1O95970 557 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 ALOX5P09917 674 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 EPB41P11171 864 aaKnown RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 RCC1P18754 421 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 TPD52L1Q16890 204 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 NSUN5P1Q3KNT7 163 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 TP53I3Q53FA7 332 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 CASC10Q5T4H9 136 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 KHDRBS2Q5VWX1 349 aaKnown RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 GDPD3Q7L5L3 318 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 MOB3BQ86TA1 216 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 NKAPP1Q8N9T2 125 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 BRSK1Q8TDC3 778 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 FAM3CQ92520 227 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 PIGCQ92535 297 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 RAB7BQ96AH8 199 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 SH3YL1Q96HL8 342 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 KCNA7Q96RP8 456 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 CCNL2Q96S94 520 aaPredicted RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 TBX15Q96SF7 602 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 HIST1H4GQ99525 98 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 TSG101Q99816 390 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 ZNF670Q9BS34 389 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 CHRDL1Q9BU40 450 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 SELENOIQ9C0D9 397 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 POLR1EQ9GZS1 481 aaKnown RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 SLC17A5Q9NRA2 495 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 FARSBQ9NSD9 589 aaKnown RBP2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 LAMP5Q9UJQ1 280 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 RAB26Q9ULW5 256 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 V9GY05 133 aa2.87□□□□□ -1.95
SMCHD1-204ENST00000581226 A0A1B0GUS0 222 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 FAM166BA8MTA8 275 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 MAGEB4O15481 346 aaPredicted RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 CXCL13O43927 109 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 FAM189A1O60320 539 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 TPST2O60704 377 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 BCAS1O75363 584 aaPredicted RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 IDH1O75874 414 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 MMP1P03956 469 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 KRT13P13646 458 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 CSNK1DP48730 415 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 KLK7P49862 253 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 MAP2K1Q02750 393 aaPredicted RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 LRRC63Q05C16 580 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 RIPK1Q13546 671 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 RIPPLY2Q5TAB7 128 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 C11orf71Q6IPW1 123 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 FTMTQ8N4E7 242 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 TEX9Q8N6V9 391 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 OR4D9Q8NGE8 314 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 OR51S1Q8NGJ8 323 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 C7orf34Q96L11 122 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 NRIP2Q9BQI9 281 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 EDEM2Q9BV94 578 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 ELOVL3Q9HB03 270 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 CHRNA9Q9UGM1 479 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 ISY1Q9ULR0 285 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 AK6Q9Y3D8 172 aaKnown RBP2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 WSB1Q9Y6I7 421 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 KDRP35968 1356 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 PLEKHH1Q9ULM0 1364 aa2.86□□□□□ -1.95
SMCHD1-204ENST00000581226 A6NIZ1 184 aa2.85□□□□□ -1.95
SMCHD1-204ENST00000581226 ADCY5O95622 1261 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms