RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 RNF32Q9H0A6 362 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 ZNF700Q9H0M5 742 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 UBQLN4Q9NRR5 601 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 RLIMQ9NVW2 624 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 FBXO34Q9NWN3 711 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 TUBA8Q9NY65 449 aaPredicted RBP9.27□□□□□ -0.93
SS18-207ENST00000577636 NDUFA13Q9P0J0 144 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 SLC35A3Q9Y2D2 325 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 TPRKBQ9Y3C4 175 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 PCNX1Q96RV3 2341 aa9.27□□□□□ -0.93
SS18-207ENST00000577636 HIVEP1P15822 2718 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CCDC168Q8NDH2 2452 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 SCN3AQ9NY46 2000 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CELSR1Q9NYQ6 3014 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 SERINC4A6NH21 518 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GTPBP1O00178 669 aaKnown RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 FRS3O43559 492 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 REM1O75628 298 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 IL33O95760 270 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 EPPINO95925 133 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CSTAP01040 98 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GASTP01350 101 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CT45A8P0DMV1 189 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CT45A9P0DMV2 189 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 OSMP13725 252 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CD99P14209 185 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ATP6V1B1P15313 513 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 POU1F1P28069 291 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GGT2P36268 569 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CD96P40200 585 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 RPL5P46777 297 aaKnown RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 NR1H2P55055 460 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 PLCXD2Q0VAA5 305 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 TUBA3CQ13748 450 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 FGFBP1Q14512 234 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 OR1C1Q15619 314 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 NPTX1Q15818 432 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 MAPK14Q16539 360 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CT45A2Q5DJT8 189 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ACER2Q5QJU3 275 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ANKRD34AQ69YU3 496 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 TUBA3EQ6PEY2 450 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ZNF613Q6PF04 617 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 NPSR1Q6W5P4 371 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 LANCL3Q6ZV70 420 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GALNTL5Q7Z4T8 443 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 TMEM200AQ86VY9 491 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GRAMD2AQ8IUY3 354 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 P3H2Q8IVL5 708 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 C17orf47Q8NEP4 570 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 B3GNT7Q8NFL0 401 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 OR4N2Q8NGD1 307 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 SLC7A13Q8TCU3 470 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 GNPDA2Q8TDQ7 276 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ADAMTS16Q8TE57 1224 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 THAP3Q8WTV1 239 aaPredicted RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 ACOT11Q8WXI4 607 aaPredicted RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 DIO2Q92813 273 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 VMP1Q96GC9 406 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 HRASLS5Q96KN8 279 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 IMMP1LQ96LU5 166 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 HS6ST2Q96MM7 605 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 PITX2Q99697 317 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 UTP23Q9BRU9 249 aaKnown RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 FAM192AQ9GZU8 254 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 WWTR1Q9GZV5 400 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 CTPS2Q9NRF8 586 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 COQ3Q9NZJ6 369 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 NDRG4Q9ULP0 352 aaKnown RBP9.26□□□□□ -0.93
SS18-207ENST00000577636 DTX4Q9Y2E6 619 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 ZNF835Q9Y2P0 537 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 SNX5Q9Y5X3 404 aa9.26□□□□□ -0.93
SS18-207ENST00000577636 LOC102723996A0A087X1L8 192 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NPIPA5A0A0B4J1W7 369 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 SAGE2PA6NJ88 616 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CLDN24A6NM45 220 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NPIPA7E9PJI5 369 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 PRRG2O14669 202 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 TO15178 435 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 UTS2O95399 124 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 ANGPTL1O95841 491 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NPIPA8P0DM63 369 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CD46P15529 392 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 IDH2P48735 452 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 NR0B1P51843 470 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 EFNA3P52797 238 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CRISP1P54107 249 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 GABARAPL2P60520 117 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CD47Q08722 323 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 EBPQ15125 230 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 OR1Q1Q15612 314 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 MEP1AQ16819 746 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 C6orf141Q5SZD1 244 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 ZNF770Q6IQ21 691 aaPredicted RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 PGBD2Q6P3X8 592 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 PAPD4Q6PIY7 484 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 TMEM205Q6UW68 189 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CASP12Q6UXS9 341 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CD300LDQ6UXZ3 194 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms