RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LARS2Q15031 903 aaKnown RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 DAZAP2Q15038 168 aaPredicted RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 EXOC3L2Q2M3D2 409 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 GTDC1Q4AE62 458 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 AGKQ53H12 422 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 COX20Q5RI15 118 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ZNF474Q6S9Z5 364 aaPredicted RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 BEND4Q6ZU67 534 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 PLEKHM3Q6ZWE6 761 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 FCRLAQ7L513 359 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 HMGN2P46Q86SG4 172 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ZNF440Q8IYI8 595 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 SLC43A2Q8N370 569 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ZNF610Q8N9Z0 462 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 FAM71CQ8NEG0 241 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 OR52P1PQ8NH57 321 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 RNF128Q8TEB7 428 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 STON2Q8WXE9 905 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ROBO4Q8WZ75 1007 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 GTF2H4Q92759 462 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 THOC1Q96FV9 657 aaKnown RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 MDFIQ99750 246 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 KLHDC3Q9BQ90 382 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 MED18Q9BUE0 208 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 KLHL4Q9C0H6 718 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 QRSL1Q9H0R6 528 aaKnown RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 SLC38A1Q9H2H9 487 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 GP6Q9HCN6 339 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 NPHS2Q9NP85 383 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 KLHL9Q9P2J3 617 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.24□□□□□ -1.25
VPS53-214ENST00000572607 CORO2BQ9UQ03 480 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 SPG11Q96JI7 2443 aa7.24□□□□□ -1.25
VPS53-214ENST00000572607 ANKHD1Q8IWZ3 2542 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 ARHGAP21Q5T5U3 1957 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 FBN3Q75N90 2809 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 A0A0G2JND7 137 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 A0A0G2JPF8 293 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 A0A1W2PP18 115 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PRAMEF27A3QJZ7 478 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CLDN24A6NM45 220 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 EVPLLA8MZ36 301 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 HNRNPCL2B2RXH8 293 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 HNRNPCL3B7ZW38 293 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SULT2B1O00204 365 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 ANGPT2O15123 496 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 HNRNPCL1O60812 293 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 EDF1O60869 148 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 DNAJA2O60884 412 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CGAP01215 116 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 C1QCP02747 245 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 TFPTP0C1Z6 253 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 HNRNPCL4P0DMR1 293 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 TROVE2P10155 538 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS53-214ENST00000572607 PPP3CBP16298 524 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CCNA2P20248 432 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 DNASE1P24855 282 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SHC1P29353 583 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 AGTR1P30556 359 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 UGT2B10P36537 528 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 IDH2P48735 452 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 CLK1P49759 484 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 POLR2HP52434 150 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 MAP2K6P52564 334 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 RAC3P60763 192 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 FAM27E3Q08E93 113 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 GUSBP1Q15486 140 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SYT14P1Q58G82 188 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 GCNT6Q5T4J0 391 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 MRPL2Q5T653 305 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 PRAMEF8Q5VWM4 474 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PRAMEF7Q5VXH5 474 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 AP1ARQ63HQ0 302 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 TMPPEQ6ZT21 453 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 ZNF550Q7Z398 422 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 BBS10Q8TAM1 723 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 ABHD3Q8WU67 409 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SLC38A5Q8WUX1 472 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CNOT9Q92600 299 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 NINJ1Q92982 152 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 DDIT4LQ96D03 193 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 ZG16BQ96DA0 208 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 AURKBQ96GD4 344 aaPredicted RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 TMEM19Q96HH6 336 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SPATA5L1Q9BVQ7 753 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SRXN1Q9BYN0 137 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PAIP1Q9H074 479 aaKnown RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 C12orf49Q9H741 205 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 COQ10BQ9H8M1 238 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CTPS2Q9NRF8 586 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PLSCR4Q9NRQ2 329 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 SLC6A13Q9NSD5 602 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 MRGBPQ9NV56 204 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 KLHL28Q9NXS3 571 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 EMC3Q9P0I2 261 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 KLHL13Q9P2N7 655 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 CHRNA9Q9UGM1 479 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 LEF1Q9UJU2 399 aaPredicted RBP7.23□□□□□ -1.25
VPS53-214ENST00000572607 DCTN4Q9UJW0 460 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PRDM4Q9UKN5 801 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms