RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SERINC1Q9NRX5 453 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 TBC1D23Q9NUY8 699 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 MRPS18AQ9NVS2 196 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 CNIH4Q9P003 139 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ABI3Q9P2A4 366 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 PSORS1C1Q9UIG5 152 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF223Q9UK11 482 aaPredicted RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 RNF6Q9Y252 685 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF337Q9Y3M9 751 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 PCDHGB5Q9Y5G0 923 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 SPIN1Q9Y657 262 aaPredicted RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 HS3ST3B1Q9Y662 390 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 RIF1Q5UIP0 2472 aaKnown RBP7.29□□□□□ -1.24
VPS39-213ENST00000570062 KNL1Q8NG31 2342 aa7.29□□□□□ -1.24
VPS39-213ENST00000570062 ZNF292O60281 2723 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 A0A087WZY1 265 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 IGLV3-32A0A0A0MS00 114 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 NPIPA5A0A0B4J1W7 369 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ANKRD33BA6NCL7 494 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ANKUB1A6NFN9 424 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 PROB1E7EW31 1015 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 PTGES3LE9PB15 166 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 NPIPA7E9PJI5 369 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 IMPA2O14732 288 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ICOSLGO75144 302 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 TRMUO75648 421 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 NDUFB2O95178 105 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SNX4O95219 450 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 LYPD3O95274 346 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SERPINA7P05543 415 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 UMODP07911 640 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 NPIPA8P0DM63 369 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 COX6A1P12074 109 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 PEPDP12955 493 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 CEACAM1P13688 526 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 PRG2P13727 222 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 GABRB1P18505 474 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 HK1P19367 917 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SDHBP21912 280 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 PAICSP22234 425 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 ELK4P28324 431 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ADH6P28332 368 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 EIF1P41567 113 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 CLK1P49759 484 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 ST13P50502 369 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 POLR2HP52434 150 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 HOXC5Q00444 222 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS39-213ENST00000570062 CTU2Q2VPK5 515 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 OXLD1Q5BKU9 147 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 EMC4Q5J8M3 183 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 HES3Q5TGS1 186 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ANKRD34AQ69YU3 496 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ARHGAP11AQ6P4F7 1023 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 DPY19L2P2Q6ZN68 376 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SHISA6Q6ZSJ9 500 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 HMGN2P46Q86SG4 172 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ATG4DQ86TL0 474 aaPredicted RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 EGFL6Q8IUX8 553 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SPARTQ8N0X7 666 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SHISA5Q8N114 240 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 LNX2Q8N448 690 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 OR11G2Q8NGC1 345 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 TMEM163Q8TC26 289 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 RNF138Q8WVD3 245 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 KIAA1143Q96AT1 154 aaPredicted RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 C3orf49Q96BT1 292 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 FAM46AQ96IP4 442 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 FER1L6-AS2Q96M78 137 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 CCDC90BQ9GZT6 254 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 CTPS2Q9NRF8 586 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 RASSF1Q9NS23 344 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 ZNF226Q9NYT6 803 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 TVP23BQ9NYZ1 205 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 KLHL21Q9UJP4 597 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 CARD8Q9Y2G2 431 aa7.28□□□□□ -1.24
VPS39-213ENST00000570062 SNRNP200O75643 2136 aaKnown RBP7.28□□□□□ -1.24
VPS39-213ENST00000570062 CACNA1HO95180 2353 aa7.27□□□□□ -1.24
VPS39-213ENST00000570062 VPS13AQ96RL7 3174 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 TRAV36DV7A0A075B6V5 113 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 IGHV3-20A0A0C4DH32 117 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CENPVL1A0A0U1RR11 272 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 A8MVM7 634 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ZNF99A8MXY4 864 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 C9orf172C9J069 976 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ARPC3O15145 178 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ATXN7O15265 892 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 PRODHO43272 600 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ZNF208O43345 1280 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 TLX2O43763 284 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 RAD1O60671 282 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 PTP4A3O75365 173 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 WBP4O75554 376 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 OR7A10O76100 309 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 TNFSF15O95150 251 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 NUDT14O95848 222 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FADS2O95864 444 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 THY1P04216 161 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CDK1P06493 297 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FUT1P19526 365 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms