RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DDAH2O95865 285 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 PTTG1O95997 202 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 IGKV3-11P04433 115 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 HLA-DPB1P04440 258 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 SBK2P0C263 348 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 PPICP45877 212 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 CD97P48960 835 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ARHGAP11AQ6P4F7 1023 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 MARCH9Q86YJ5 346 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 PLXDC1Q8IUK5 500 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ZNF721Q8TF20 911 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 MVB12AQ96EY5 273 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 SLC46A1Q96NT5 459 aa18.59■□□□□ 0.57
CLN3-230ENST00000568076 ASXL3Q9C0F0 2248 aa18.58■□□□□ 0.57
CLN3-230ENST00000568076 IGKV1D-42A0A075B6H8 117 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 CD8B2A6NJW9 211 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 NDUFB2O95178 105 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 IL33O95760 270 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 DCNP07585 359 aaKnown RBP18.58■□□□□ 0.56
CLN3-230ENST00000568076 CD8BP10966 210 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 GLB1P16278 677 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 HIST1H1CP16403 213 aaKnown RBP18.58■□□□□ 0.56
CLN3-230ENST00000568076 COPZ1P61923 177 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 DESI1Q6ICB0 168 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 CBLN3Q6UW01 205 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 CARFQ8N187 725 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 SLC43A2Q8N370 569 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 SDR9C7Q8NEX9 313 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 SLC2A12Q8TD20 617 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 ADIPOR1Q96A54 375 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 ZNF524Q96C55 264 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 SLC41A2Q96JW4 573 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 COQ7Q99807 217 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 UBQLN4Q9NRR5 601 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 SEMA5BQ9P283 1151 aa18.58■□□□□ 0.56
CLN3-230ENST00000568076 MN1Q10571 1320 aaPredicted RBP18.57■□□□□ 0.56
CLN3-230ENST00000568076 C2orf92A0A1B0GVN3 265 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 RNF13O43567 381 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 GAAP10253 952 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 ADH7P40394 386 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 ZNF85Q03923 595 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 SKP2Q13309 424 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 GXYLT1Q4G148 440 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 VWA2Q5GFL6 755 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 GDPD3Q7L5L3 318 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 OR52E2Q8NGJ4 325 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 OR4K13Q8NH42 304 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 KLHDC3Q9BQ90 382 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 SRRQ9GZT4 340 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 DUSP15Q9H1R2 295 aaPredicted RBP18.57■□□□□ 0.56
CLN3-230ENST00000568076 INPP5EQ9NRR6 644 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 HAO2Q9NYQ3 351 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 ZMIZ1Q9ULJ6 1067 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 IER3IP1Q9Y5U9 82 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 E9PI62 339 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 CASKO14936 926 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 UTS2O95399 124 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 DLGAP3O95886 979 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 RORAP35398 523 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 SHBQ15464 509 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 GLYR1Q49A26 553 aaPredicted RBP18.57■□□□□ 0.56
CLN3-230ENST00000568076 ZNF440Q8IYI8 595 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 NLGN4YQ8NFZ3 816 aaPredicted RBP18.57■□□□□ 0.56
CLN3-230ENST00000568076 NEIL3Q8TAT5 605 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 SMPDL3BQ92485 455 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 TBC1D24Q9ULP9 559 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 ADAM18Q9Y3Q7 739 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 CLCA3PQ9Y6N3 262 aa18.57■□□□□ 0.56
CLN3-230ENST00000568076 SDK1Q7Z5N4 2213 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 TCRBV16S1A1N1A0A5B0 115 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 FRG2CA6NGY1 282 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 GTPBP1O00178 669 aaKnown RBP18.56■□□□□ 0.56
CLN3-230ENST00000568076 SSX4O60224 188 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 IFNGP01579 166 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 MST1P26927 711 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 CXCL12P48061 93 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 GPR50Q13585 617 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 BAK1Q16611 211 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 OR8H2Q8N162 312 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 FAM181AQ8N9Y4 354 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 GALNT6Q8NCL4 622 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 PHOSPHO1Q8TCT1 267 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 LCORQ96JN0 433 aaPredicted RBP18.56■□□□□ 0.56
CLN3-230ENST00000568076 NUDT9Q9BW91 350 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 HOXD1Q9GZZ0 328 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 POLHQ9Y253 713 aa18.56■□□□□ 0.56
CLN3-230ENST00000568076 NCR1O76036 304 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 UBL4AP11441 157 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 AZGP1P25311 298 aaKnown RBP18.55■□□□□ 0.56
CLN3-230ENST00000568076 GPLD1P80108 840 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 C1orf189Q5VU69 101 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 FAAH2Q6GMR7 532 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 SSX6Q7RTT6 188 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 PRR22Q8IZ63 422 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 ZNF527Q8NB42 609 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 RNF31Q96EP0 1072 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 NUDT22Q9BRQ3 303 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 NDC1Q9BTX1 674 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 RTN4RQ9BZR6 473 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 NRSN2Q9GZP1 204 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms