RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	RTTN	Q86VV8	2226 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	IGHV3-15	A0A0B4J1V0	119 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635		A0A1W2PPR1	153 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TMEM247	A6NEH6	219 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CLDN24	A6NM45	220 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF724	A8MTY0	619 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	SIAH2	O43255	324 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLF4	O43474	513 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CYTIP	O60759	359 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	THBD	P07204	575 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TFPT	P0C1Z6	253 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CD53	P19397	219 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLK2	P20151	261 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	PSMB1	P20618	241 aa	Known RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	RPS4Y1	P22090	263 aa	Known RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CCKAR	P32238	428 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	DIO1	P49895	249 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	IDH3A	P50213	366 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	MVD	P53602	400 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	STX1B	P61266	288 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	P2RY6	Q15077	328 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	SYT14P1	Q58G82	188 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	C6orf10	Q5SRN2	563 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TFAP2E	Q6VUC0	442 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	GRINA	Q7Z429	371 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CXorf67	Q86X51	503 aa	Predicted RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF440	Q8IYI8	595 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	STEAP2	Q8NFT2	490 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	SLC38A5	Q8WUX1	472 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	GTF2H4	Q92759	462 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	VPS33A	Q96AX1	596 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF775	Q96BV0	537 aa	Predicted RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	USB1	Q9BQ65	265 aa	Known RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TMUB1	Q9BVT8	246 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	ACTR6	Q9GZN1	396 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TPT1P8	Q9HAU6	139 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	BCO1	Q9HAY6	547 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	SLCO1B3	Q9NPD5	702 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TCF7L2	Q9NQB0	619 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	BEX4	Q9NWD9	120 aa	Predicted RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	THUMPD1	Q9NXG2	353 aa	Known RBP	6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CALML5	Q9NZT1	146 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLHL9	Q9P2J3	617 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CHRNA9	Q9UGM1	479 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	TRAPPC4	Q9Y296	219 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	HDGFL3	Q9Y3E1	203 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	PCDHB14	Q9Y5E9	798 aa		6.15	□□□□□ -1.42
SF3B3-209	ENST00000567635	CSPG4	Q6UVK1	2322 aa		6.15	□□□□□ -1.43
SF3B3-209	ENST00000567635	TLN2	Q9Y4G6	2542 aa		6.15	□□□□□ -1.43
SF3B3-209	ENST00000567635	TMED7-TICAM2	A0A0A6YYA0	188 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635		A0A0G2JPF8	293 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	CFAP73	A6NFT4	308 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	HNRNPCL2	B2RXH8	293 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ZNF814	B7Z6K7	855 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	HNRNPCL3	B7ZW38	293 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	CLIC1	O00299	241 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	FAAH	O00519	579 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	GPR171	O14626	319 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	SMAD9	O15198	467 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	HNRNPCL1	O60812	293 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	SHOX2	O60902	331 aa	Predicted RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ADAM11	O75078	769 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	GCM2	O75603	506 aa	Predicted RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	PMS2P2	O95744	297 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ADA	P00813	363 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	FES	P07332	822 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	HNRNPCL4	P0DMR1	293 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ETFA	P13804	333 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	UQCRB	P14927	111 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	CCNA2	P20248	432 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	FPR1	P21462	350 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	IL32	P24001	234 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	LOX	P28300	417 aa	Predicted RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	SLC1A3	P43003	542 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	OR3A2	P47893	321 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	MRPL19	P49406	292 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	POLR2H	P52434	150 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	MAP2K6	P52564	334 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	CRISP3	P54108	245 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	NR1H2	P55055	460 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	OR2B6	P58173	313 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	DSTN	P60981	165 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ADAM8	P78325	824 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	IRX1	P78414	480 aa	Predicted RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ITGAD	Q13349	1161 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	LARS2	Q15031	903 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	PDK3	Q15120	406 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	MAPK11	Q15759	364 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ACKR1	Q16570	336 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ZSWIM7	Q19AV6	140 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	BEX5	Q5H9J7	111 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	SFRP5	Q5T4F7	317 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	MRPL2	Q5T653	305 aa	Known RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	BLOC1S3	Q6QNY0	202 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	GALNT5	Q7Z7M9	940 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	VRK2	Q86Y07	508 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	WFDC8	Q8IUA0	241 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	ZNF100	Q8IYN0	542 aa		6.14	□□□□□ -1.43
SF3B3-209	ENST00000567635	GABRG1	Q8N1C3	465 aa		6.14	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms