RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 AQP8O94778 261 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 CLDN1O95832 211 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 TCN1P20061 433 aaPredicted RBP17.53■□□□□ 0.4
CLN3-225ENST00000566824 POLR2HP52434 150 aaKnown RBP17.53■□□□□ 0.4
CLN3-225ENST00000566824 AGFG1P52594 562 aaKnown RBP17.53■□□□□ 0.4
CLN3-225ENST00000566824 CEACAM7Q14002 265 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 PON3Q15166 354 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 RIPPLY2Q5TAB7 128 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 C3orf33Q6P1S2 294 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 MTFR2Q6P444 385 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 ESPNLQ6ZVH7 1005 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 SLC26A7Q8TE54 656 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 SDCCAG3Q96C92 435 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 ARL5BQ96KC2 179 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 CHRNA9Q9UGM1 479 aa17.53■□□□□ 0.4
CLN3-225ENST00000566824 A0A1B0GWA3 101 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 SLC22A20A6NK97 555 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 SYT5O00445 386 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 GSTA4O15217 222 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 C8BP07358 591 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 CALB2P22676 271 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 SYT14P1Q58G82 188 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 C16orf89Q6UX73 402 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 ATG4DQ86TL0 474 aaPredicted RBP17.52■□□□□ 0.4
CLN3-225ENST00000566824 GCNT2Q8N0V5 402 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 EID3Q8N140 333 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 BHLHE22Q8NFJ8 381 aaPredicted RBP17.52■□□□□ 0.4
CLN3-225ENST00000566824 OR52E4Q8NGH9 312 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 ROBO4Q8WZ75 1007 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 WNT2BQ93097 391 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 OR5B2Q96R09 309 aa17.52■□□□□ 0.4
CLN3-225ENST00000566824 THY1P04216 161 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 TFPIP10646 304 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 UQCRBP14927 111 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 GGT1P19440 569 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 TIMP3P35625 211 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 HTR3AP46098 478 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 OR1E2P47887 323 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 SMSP52788 366 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 CARD18P57730 90 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 RPS3AP61247 264 aaKnown RBP17.51■□□□□ 0.39
CLN3-225ENST00000566824 COPZ1P61923 177 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 OR1Q1Q15612 314 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 SGCBQ16585 318 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 PPP4R4Q6NUP7 873 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 CHMP1BQ7LBR1 199 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 VTCN1Q7Z7D3 282 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 ZNF808Q8N4W9 903 aaPredicted RBP17.51■□□□□ 0.39
CLN3-225ENST00000566824 INTS12Q96CB8 462 aaKnown RBP17.51■□□□□ 0.39
CLN3-225ENST00000566824 PSMG3-AS1Q96PY0 264 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 MCHR1Q99705 422 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 UCK2Q9BZX2 261 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 SERINC1Q9NRX5 453 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 KLHL28Q9NXS3 571 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 TAS2R1Q9NYW7 299 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 STOML1Q9UBI4 398 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 SLC13A4Q9UKG4 626 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 SH3GLB1Q9Y371 365 aa17.51■□□□□ 0.39
CLN3-225ENST00000566824 IGHV3-15A0A0B4J1V0 119 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 LYPD3O95274 346 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 IMPDH2P12268 514 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 HSD17B1P14061 328 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 PTNP21246 168 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 HTR1EP28566 365 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 HCFC1P51610 2035 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 MNAT1P51948 309 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 MYBPHQ13203 477 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 SF3B4Q15427 424 aaKnown RBP eCLIP17.5■□□□□ 0.392e-7■■■■□ 24.8
CLN3-225ENST00000566824 CARM1Q86X55 608 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 P3H2Q8IVL5 708 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 LSMEM1Q8N8F7 131 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 TPD52L3Q96J77 140 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 ZNF559Q9BR84 538 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 PCDHAC1Q9H158 963 aa17.5■□□□□ 0.39
CLN3-225ENST00000566824 TESQ9UGI8 421 aaKnown RBP17.5■□□□□ 0.39
CLN3-225ENST00000566824 NKX2-6A6NCS4 301 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 CPSF4LA6NMK7 179 aaKnown RBP17.49■□□□□ 0.39
CLN3-225ENST00000566824 RCBTB2O95199 551 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 SERPINA1P01009 418 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 ENPP1P22413 925 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 CXCR1P25024 350 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 SLC7A1P30825 629 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 FXNQ16595 210 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 ZNF239Q16600 458 aaKnown RBP17.49■□□□□ 0.39
CLN3-225ENST00000566824 SAMD4BQ5PRF9 694 aaKnown RBP17.49■□□□□ 0.39
CLN3-225ENST00000566824 GLYATQ6IB77 296 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 FAM86B1Q8N7N1 296 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 TRIM2Q9C040 744 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 CLEC4AQ9UMR7 237 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 ZNF175Q9Y473 711 aa17.49■□□□□ 0.39
CLN3-225ENST00000566824 IGKV1D-42A0A075B6H8 117 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 A0A0B4J2E0 115 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 A0A1B0GX12 115 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 GJE1A6NN92 205 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 FAM90A27PA6NNH2 459 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 ZNF814B7Z6K7 855 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 ZNF682O95780 498 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 IL2RAP01589 272 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 TMIGD3P0DMS9 266 aaPredicted RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 FUT4P22083 530 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms