RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DNPH1O43598 174 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 SMPD2O60906 423 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 GCM2O75603 506 aaPredicted RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 PMS2P2O95744 297 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ADAP00813 363 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 CCNA2P20248 432 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 OR3A2P47893 321 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 POLR2HP52434 150 aaKnown RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 NKX6-1P78426 367 aaPredicted RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 FOXD4Q12950 439 aaPredicted RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 ITGADQ13349 1161 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 MRPL2Q5T653 305 aaKnown RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 ALKBH2Q6NS38 261 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ADGRG3Q86Y34 549 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 P3H2Q8IVL5 708 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ZNF100Q8IYN0 542 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 OR9I1Q8NGQ6 314 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 OR52P1PQ8NH57 321 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 HSD17B8Q92506 261 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 VPS33AQ96AX1 596 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ZNF775Q96BV0 537 aaPredicted RBP14.96□□□□□ -0.01
CLK3-210ENST00000563112 DDIT4LQ96D03 193 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 PLPPR2Q96GM1 343 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 CCL19Q99731 98 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 RAD21L1Q9H4I0 556 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 SLC6A13Q9NSD5 602 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 PRDM4Q9UKN5 801 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ZNF232Q9UNY5 417 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 ARID1AO14497 2285 aa14.96□□□□□ -0.01
CLK3-210ENST00000563112 TMED7-TICAM2A0A0A6YYA0 188 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 FAAHO00519 579 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 AP3D1O14617 1153 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 ETFAP13804 333 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 FOSL1P15407 271 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 RPS4Y1P22090 263 aaKnown RBP14.95□□□□□ -0.02
CLK3-210ENST00000563112 SLC1A3P43003 542 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 MAP2K6P52564 334 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 LARS2Q15031 903 aaKnown RBP14.95□□□□□ -0.02
CLK3-210ENST00000563112 PDK3Q15120 406 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 ZSWIM7Q19AV6 140 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 LIN52Q52LA3 116 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 SHEQ5VZ18 495 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 Q6ZT83 130 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 LRRC75A-AS1Q8N1F1 130 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 PIGXQ8TBF5 258 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 ZNF300Q96RE9 604 aaPredicted RBP14.95□□□□□ -0.02
CLK3-210ENST00000563112 CCDC28BQ9BUN5 200 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 ARMC7Q9H6L4 198 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 TMEM181Q9P2C4 612 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 ING1Q9UK53 422 aaPredicted RBP14.95□□□□□ -0.02
CLK3-210ENST00000563112 TRAPPC4Q9Y296 219 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 TMED7Q9Y3B3 224 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 NF1P21359 2839 aa14.95□□□□□ -0.02
CLK3-210ENST00000563112 DSCAMO60469 2012 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 A0A0G2JPF8 293 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 HNRNPCL2B2RXH8 293 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 ZNF814B7Z6K7 855 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 HNRNPCL3B7ZW38 293 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 GPR171O14626 319 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 ZNF208O43345 1280 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 HNRNPCL1O60812 293 aaKnown RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 ADAM11O75078 769 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 CNOT4O95628 575 aaKnown RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 BCHEP06276 602 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 TFPTP0C1Z6 253 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 HNRNPCL4P0DMR1 293 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 LOXP28300 417 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 TACR3P29371 465 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 HOXC12P31275 282 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 MRPL19P49406 292 aaKnown RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 IDH3AP50213 366 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 MVDP53602 400 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 OR2B6P58173 313 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 COPZ1P61923 177 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 PLAURQ03405 335 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 EPS8Q12929 822 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 CAPRIN1Q14444 709 aaKnown RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 TSC22D1Q15714 1073 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 GTDC1Q4AE62 458 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 ABLIM2Q6H8Q1 611 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 ZNF704Q6ZNC4 412 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 BHLHA15Q7RTS1 189 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 HDXQ7Z353 690 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 SLC38A5Q8WUX1 472 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 GTF2H4Q92759 462 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 AURKBQ96GD4 344 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 ARL5BQ96KC2 179 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 NAA11Q9BSU3 229 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 OR11A1Q9GZK7 315 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 SLCO1B3Q9NPD5 702 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 ARGLU1Q9NWB6 273 aaPredicted RBP14.94□□□□□ -0.02
CLK3-210ENST00000563112 OSGIN1Q9UJX0 560 aa14.94□□□□□ -0.02
CLK3-210ENST00000563112 IGKV3D-15A0A087WSY6 115 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 CDHR4A6H8M9 788 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 HMGB1P1B2RPK0 211 aaPredicted RBP14.93□□□□□ -0.02
CLK3-210ENST00000563112 CLIC1O00299 241 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 EIF1BO60739 113 aaKnown RBP14.93□□□□□ -0.02
CLK3-210ENST00000563112 CXCR1P25024 350 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 AQP5P55064 265 aa14.93□□□□□ -0.02
CLK3-210ENST00000563112 SLC35A1P78382 337 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms