RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 C1orf185Q5T7R7 199 aa8.79□□□□□ -1
CLK3-208ENST00000562626 WLSQ5T9L3 541 aa8.79□□□□□ -1
CLK3-208ENST00000562626 WBP2NLQ6ICG8 309 aa8.79□□□□□ -1
CLK3-208ENST00000562626 AAGABQ6PD74 315 aa8.79□□□□□ -1
CLK3-208ENST00000562626 CYP2R1Q6VVX0 501 aa8.79□□□□□ -1
CLK3-208ENST00000562626 GRINAQ7Z429 371 aa8.79□□□□□ -1
CLK3-208ENST00000562626 ATG4DQ86TL0 474 aaPredicted RBP8.79□□□□□ -1
CLK3-208ENST00000562626 ZNF440Q8IYI8 595 aa8.79□□□□□ -1
CLK3-208ENST00000562626 C9orf106Q8NAJ2 232 aa8.79□□□□□ -1
CLK3-208ENST00000562626 OR52E4Q8NGH9 312 aa8.79□□□□□ -1
CLK3-208ENST00000562626 TMEM234Q8WY98 164 aa8.79□□□□□ -1
CLK3-208ENST00000562626 SLC35B4Q969S0 331 aa8.79□□□□□ -1
CLK3-208ENST00000562626 CCDC124Q96CT7 223 aaKnown RBP8.79□□□□□ -1
CLK3-208ENST00000562626 CCDC120Q96HB5 630 aa8.79□□□□□ -1
CLK3-208ENST00000562626 MCHR1Q99705 422 aa8.79□□□□□ -1
CLK3-208ENST00000562626 PRSS27Q9BQR3 290 aa8.79□□□□□ -1
CLK3-208ENST00000562626 BTBD10Q9BSF8 475 aa8.79□□□□□ -1
CLK3-208ENST00000562626 AMBRA1Q9C0C7 1298 aa8.79□□□□□ -1
CLK3-208ENST00000562626 DCAF13Q9NV06 445 aaKnown RBP8.79□□□□□ -1
CLK3-208ENST00000562626 NDE1Q9NXR1 346 aa8.79□□□□□ -1
CLK3-208ENST00000562626 CLCF1Q9UBD9 225 aa8.79□□□□□ -1
CLK3-208ENST00000562626 AP4B1Q9Y6B7 739 aa8.79□□□□□ -1
CLK3-208ENST00000562626 PRRG2O14669 202 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ACOT8O14734 319 aa8.78□□□□□ -1
CLK3-208ENST00000562626 FFAR1O14842 300 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ADAMDEC1O15204 470 aa8.78□□□□□ -1
CLK3-208ENST00000562626 GYG2O15488 501 aa8.78□□□□□ -1
CLK3-208ENST00000562626 CXCL13O43927 109 aa8.78□□□□□ -1
CLK3-208ENST00000562626 RAMP1O60894 148 aa8.78□□□□□ -1
CLK3-208ENST00000562626 AQP8O94778 261 aa8.78□□□□□ -1
CLK3-208ENST00000562626 PRKD3O94806 890 aa8.78□□□□□ -1
CLK3-208ENST00000562626 IMPDH2P12268 514 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ME2P23368 584 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ELK4P28324 431 aa8.78□□□□□ -1
CLK3-208ENST00000562626 EIF1P41567 113 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 YAP1P46937 504 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 ERFP50548 548 aa8.78□□□□□ -1
CLK3-208ENST00000562626 POLR2HP52434 150 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 CDH12P55289 794 aa8.78□□□□□ -1
CLK3-208ENST00000562626 LSM11P83369 360 aaKnown RBP eCLIP8.78□□□□□ -1
CLK3-208ENST00000562626 SELENBP1Q13228 472 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ZSWIM7Q19AV6 140 aa8.78□□□□□ -1
CLK3-208ENST00000562626 IQCCQ4KMZ1 466 aa8.78□□□□□ -1
CLK3-208ENST00000562626 DEF8Q6ZN54 512 aa8.78□□□□□ -1
CLK3-208ENST00000562626 LSMEM1Q8N8F7 131 aa8.78□□□□□ -1
CLK3-208ENST00000562626 TNIP2Q8NFZ5 429 aa8.78□□□□□ -1
CLK3-208ENST00000562626 OR10D3Q8NH80 312 aa8.78□□□□□ -1
CLK3-208ENST00000562626 FNDC9Q8TBE3 224 aa8.78□□□□□ -1
CLK3-208ENST00000562626 UTP4Q969X6 686 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 KLHL15Q96M94 604 aa8.78□□□□□ -1
CLK3-208ENST00000562626 TRIB1Q96RU8 372 aa8.78□□□□□ -1
CLK3-208ENST00000562626 ZNF559Q9BR84 538 aa8.78□□□□□ -1
CLK3-208ENST00000562626 TTYH2Q9BSA4 534 aa8.78□□□□□ -1
CLK3-208ENST00000562626 TP63Q9H3D4 680 aaPredicted RBP8.78□□□□□ -1
CLK3-208ENST00000562626 GORASP2Q9H8Y8 452 aa8.78□□□□□ -1
CLK3-208ENST00000562626 CACYBPQ9HB71 228 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 HHATLQ9HCP6 504 aa8.78□□□□□ -1
CLK3-208ENST00000562626 TESQ9UGI8 421 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 CHRNA9Q9UGM1 479 aa8.78□□□□□ -1
CLK3-208ENST00000562626 PRPF19Q9UMS4 504 aaKnown RBP8.78□□□□□ -1
CLK3-208ENST00000562626 A4GNTQ9UNA3 340 aa8.78□□□□□ -1
CLK3-208ENST00000562626 IGHV3-15A0A0B4J1V0 119 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 A0A0G2JNJ9 132 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ZG16O60844 167 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 WDR1O75083 606 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 NPIPB7O75200 414 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 DNAJC8O75937 253 aaPredicted RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 DIRAS1O95057 198 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 PRSS23O95084 383 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 LDLRP01130 860 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 APOBEC1P41238 236 aaKnown RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 EIF1AXP47813 144 aaKnown RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 VLDLRP98155 873 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 PMPCAQ10713 525 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 FOXF2Q12947 444 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 FOXD4Q12950 439 aaPredicted RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 MYBPHQ13203 477 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 PIN1Q13526 163 aaPredicted RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 TRIM25Q14258 630 aaKnown RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 BCL2A1Q16548 175 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 SYT14P1Q58G82 188 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ALG10BQ5I7T1 473 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 HBMQ6B0K9 141 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 LCN8Q6JVE9 175 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 C3orf33Q6P1S2 294 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 LINC00114Q6XXX2 140 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ASRGL1Q7L266 308 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 GDF7Q7Z4P5 450 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 CCDC71Q8IV32 467 aaPredicted RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 LIX1LQ8IVB5 337 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 NKAIN4Q8IVV8 208 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 BHLHE22Q8NFJ8 381 aaPredicted RBP8.77□□□□□ -1.01
CLK3-208ENST00000562626 OR2V1Q8NHB1 315 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ZPLD1Q8TCW7 415 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ADAMTS16Q8TE57 1224 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ROBO4Q8WZ75 1007 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 PROX1Q92786 737 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 C7orf34Q96L11 122 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 OR5B2Q96R09 309 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 UCN2Q96RP3 112 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 348.8 ms