RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TEX264Q9Y6I9 313 aa4.92□□□□□ -1.62
RTF1-204ENST00000558117 CLCA3PQ9Y6N3 262 aa4.92□□□□□ -1.62
RTF1-204ENST00000558117 YLPM1P49750 1951 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 IGHV4-30-2A0A087WSY4 118 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 IGHV1-45A0A0A0MS14 117 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 IGLV9-49A0A0B4J1Y8 123 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 A0A1W2PPM1 405 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 PDZK1P1A8MUH7 402 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 TRAFD1O14545 582 aaPredicted RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 KDELR3O43731 214 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 NME2P1O60361 137 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 OR2B3O76000 313 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 HNF1AP20823 631 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 CDH3P22223 829 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 LOXP28300 417 aaPredicted RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 SOAT1P35610 550 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 GABRA4P48169 554 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 EFNA3P52797 238 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 DCDC1P59894 354 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 LOXL1Q08397 574 aaPredicted RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 MZT1Q08AG7 82 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 FASTKQ14296 549 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 SGCBQ16585 318 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 HSP90AA5PQ58FG0 334 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 ACER2Q5QJU3 275 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 RNASEH2BQ5TBB1 312 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 CCBE1Q6UXH8 406 aaPredicted RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 LRRC31Q6UY01 552 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 SH2D5Q6ZV89 423 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 NOTCH2NLQ7Z3S9 236 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 ZNF554Q86TJ5 538 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 OOSP2Q86WS3 158 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 C12orf56Q8IXR9 622 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 ZNF595Q8IYB9 648 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 FBXW8Q8N3Y1 598 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 OTUD6BQ8N6M0 293 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 PAPD5Q8NDF8 572 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 FGFBP3Q8TAT2 258 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 ST7LQ8TDW4 575 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 TMEM190Q8WZ59 177 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 EXT2Q93063 718 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 AP2M1Q96CW1 435 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 C8orf76Q96K31 380 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 RMDN2Q96LZ7 410 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 NPAS2Q99743 824 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 LLPHQ9BRT6 129 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 UTP23Q9BRU9 249 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 FANCFQ9NPI8 374 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 CD84Q9UIB8 345 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 TEKT2Q9UIF3 430 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 NXT1Q9UKK6 140 aaKnown RBP4.91□□□□□ -1.62
RTF1-204ENST00000558117 POMT2Q9UKY4 750 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 HPCAL4Q9UM19 191 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 WDR37Q9Y2I8 494 aa4.91□□□□□ -1.62
RTF1-204ENST00000558117 GSAPA4D1B5 854 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 OR6C74A6NCV1 312 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 C5orf52A6NGY3 159 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 GABRR3A8MPY1 467 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 PSMD11O00231 422 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 CASKO14936 926 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 RIPK2O43353 540 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 KIAA0513O60268 411 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 PALMO75781 387 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 OPN1MWP04001 364 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 LINGO3P0C6S8 592 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 OPN1MW2P0DN77 364 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 OPN1MW3P0DN78 364 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 PFKFB1P16118 471 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 GNB3P16520 340 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 PBLDP30039 288 aaPredicted RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 RFC3P40938 356 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 RGRP47804 291 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 HNMTP50135 292 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 B3GALT5-AS1P59052 145 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 SNRPFP62306 86 aaKnown RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 POLR2LP62875 67 aaKnown RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 KLC1Q07866 573 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ACSM1Q08AH1 577 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 NME3Q13232 169 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 PTPRCAPQ14761 206 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 TAZQ16635 292 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 AARDQ4LEZ3 155 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 C1orf185Q5T7R7 199 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 H3F3CQ6NXT2 135 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 CCDC73Q6ZRK6 1079 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ISCA2Q86U28 154 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 COMMD2Q86X83 199 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 DEFB106AQ8N104 65 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ZNF383Q8NA42 475 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ADAD2Q8NCV1 583 aaKnown RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 NEK11Q8NG66 645 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 OR13J1Q8NGT2 312 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 EXD1Q8NHP7 514 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 MRPL24Q96A35 216 aaKnown RBP4.9□□□□□ -1.63
RTF1-204ENST00000558117 PIK3IP1Q96FE7 263 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 ART5Q96L15 291 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 LRR1Q96L50 414 aa4.9□□□□□ -1.63
RTF1-204ENST00000558117 TXN2Q99757 166 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms