RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	COL28A1	Q2UY09	1125 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ANKDD1A	Q495B1	522 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	SYT14P1	Q58G82	188 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	GTF2IRD2B	Q6EKJ0	949 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	GTF2IRD2	Q86UP8	949 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ARMC10	Q8N2F6	343 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	FAR1	Q8WVX9	515 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	LIPH	Q8WWY8	451 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	TMEM234	Q8WY98	164 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	FGF11	Q92914	225 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	RFK	Q969G6	155 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF582	Q96NG8	517 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	SECISBP2	Q96T21	854 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	RHNO1	Q9BSD3	238 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	IFT27	Q9BW83	186 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF160	Q9HCG1	818 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	FAM86C1	Q9NVL1	165 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	TAS2R10	Q9NYW0	307 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	KLRF1	Q9NZS2	232 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	RSL24D1	Q9UHA3	163 aa	Known RBP	11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF337	Q9Y3M9	751 aa		11.38	□□□□□ -0.59
SHMT2-233	ENST00000557529	KDM4E	B2RXH2	506 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	BHLHE40	O14503	412 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	ADAM10	O14672	748 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	PRODH	O43272	600 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	RAD1	O60671	282 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	ITGA10	O75578	1167 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	NDUFB2	O95178	105 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	FADS2	O95864	444 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	CH25H	O95992	272 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	FUT1	P19526	365 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	CSRP1	P21291	193 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	SSR4	P51571	173 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	POLR2H	P52434	150 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	GAS1	P54826	345 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	RPS18	P62269	152 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	SNTA1	Q13424	505 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	TBCE	Q15813	527 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	CNPY1	Q3B7I2	92 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF791	Q3KP31	576 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	C5orf46	Q6UWT4	87 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	GRINA	Q7Z429	371 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	TMPRSS12	Q86WS5	348 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	RPS19BP1	Q86WX3	136 aa	Known RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	RAB43	Q86YS6	212 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	CLVS1	Q8IUQ0	354 aa	Predicted RBP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	OR51A7	Q8NH64	312 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	ST8SIA1	Q92185	356 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	TNFRSF13C	Q96RJ3	184 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	PHOX2B	Q99453	314 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	CDCA4	Q9BXL8	241 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	NDEL1	Q9GZM8	345 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	LHPP	Q9H008	270 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	FN3K	Q9H479	309 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	METTL7A	Q9H8H3	244 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	MCCC2	Q9HCC0	563 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	ACOT13	Q9NPJ3	140 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	PPP4R1L	Q9P1A2	415 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	OSGIN1	Q9UJX0	560 aa		11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
SHMT2-233	ENST00000557529	TRAV27	A0A087WT01	109 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	IGLV3-32	A0A0A0MS00	114 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	STMND1	H3BQB6	276 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	NOL3	O60936	208 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CELA2A	P08217	269 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	STS	P08842	583 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	DBT	P11182	482 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CD82	P27701	267 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	DCK	P27707	260 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	DLST	P36957	453 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	SOX3	P41225	446 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	MAP2K4	P45985	399 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	MASP1	P48740	699 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	DLX5	P56178	289 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	PRPS1	P60891	318 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF91	Q05481	1191 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CHAF1B	Q13112	559 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	TOMM34	Q15785	309 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	ZNF74	Q16587	644 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	KLHL22	Q53GT1	634 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	SYT6	Q5T7P8	510 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	UBE2U	Q5VVX9	321 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	ARHGAP11A	Q6P4F7	1023 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	TMEM81	Q6P7N7	255 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CCDC81	Q6ZN84	652 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	SLC46A3	Q7Z3Q1	461 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	C10orf53	Q8N6V4	93 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	ANKK1	Q8NFD2	765 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	OR10G3	Q8NGC4	313 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	ASB15	Q8WXK1	588 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CRELD1	Q96HD1	420 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	TMEM80	Q96HE8	168 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CPNE5	Q9HCH3	593 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	CMC2	Q9NRP2	79 aa		11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	MRPS18A	Q9NVS2	196 aa	Known RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	H2AFY2	Q9P0M6	372 aa	Predicted RBP	11.36	□□□□□ -0.59
SHMT2-233	ENST00000557529	IL20RA	Q9UHF4	553 aa		11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms