RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	SLC25A15	Q9Y619	301 aa		4.08	□□□□□ -1.76
SCFD1-223	ENST00000557076		A0A087WZY1	265 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076		A0A1B0GUS0	222 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076		B9A039	149 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	FOXE1	O00358	373 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SCAMP2	O15127	329 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	MPPED1	O15442	326 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TAPBP	O15533	448 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SHOX2	O60902	331 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SH3BGRL	O75368	114 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	EED	O75530	441 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PRSS23	O95084	383 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TPM3	P06753	285 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TPM1	P09493	284 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	DAO	P14920	347 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	EPOR	P19235	508 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CSNK2A2	P19784	350 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	IGHV1-2	P23083	117 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC6A2	P23975	617 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PSMA4	P25789	261 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	IL12B	P29460	328 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	EVI2B	P34910	448 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	KRT20	P35900	424 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RAP1GDS1	P52306	607 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	NAP1L1	P55209	391 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SNRPD2	P62316	118 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TPM4	P67936	248 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RASGEF1B	Q0VAM2	473 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CHIT1	Q13231	466 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SNX1	Q13596	522 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CUL3	Q13618	768 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	EXOSC7	Q15024	291 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	MLC1	Q15049	377 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SPA17	Q15506	151 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNHIT3	Q15649	155 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PDK4	Q16654	411 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TRMT12	Q53H54	448 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TCHHL1	Q5QJ38	904 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	VAX1	Q5SQQ9	334 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RBM20	Q5T481	1227 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	LCE1A	Q5T7P2	110 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ANKRD22	Q5VYY1	191 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	HBM	Q6B0K9	141 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR7E24	Q6IFN5	339 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SULT1C3	Q6IMI6	304 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CYP20A1	Q6UW02	462 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PEX26	Q7Z412	305 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ADAMTSL2	Q86TH1	951 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TRABD2A	Q86V40	505 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CNTN4	Q8IWV2	1026 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CCDC170	Q8IYT3	715 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076		Q8N9P0	234 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR52R1	Q8NGF1	315 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	HUS1B	Q8NHY5	278 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	NANP	Q8TBE9	248 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RNF128	Q8TEB7	428 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TRPC4AP	Q8TEL6	797 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ABHD3	Q8WU67	409 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	C1orf54	Q8WWF1	131 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	JADE3	Q92613	823 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CPNE4	Q96A23	557 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	LRRC58	Q96CX6	371 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	FBXO17	Q96EF6	278 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	VRK1	Q99986	396 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RTN4R	Q9BZR6	473 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	RACGAP1	Q9H0H5	632 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PLK3	Q9H4B4	646 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZMAT3	Q9HA38	289 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	XAB2	Q9HCS7	855 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC52A3	Q9NQ40	469 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	FAM120C	Q9NX05	1096 aa	Known RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	MAT2B	Q9NZL9	334 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PDP1	Q9P0J1	537 aa	Predicted RBP	4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	IFNK	Q9P0W0	207 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC23A1	Q9UHI7	598 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	CES1P1	Q9UKY3	287 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	ABCG2	Q9UNQ0	655 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	TFR2	Q9UP52	801 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PLLP	Q9Y342	182 aa		4.07	□□□□□ -1.76
SCFD1-223	ENST00000557076	PCNX3	Q9H6A9	2034 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	GOLGA6L10	A6NI86	522 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	CCT8L1P	A6NM43	557 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	C17orf51	A8MQB3	221 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF724	A8MTY0	619 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	CLDN34	H7C241	214 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076		M0QZ24	198 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	TNFSF11	O14788	317 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	TIMM23	O14925	209 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PHGDH	O43175	533 aa	Known RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	RGS14	O43566	566 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PDE5A	O76074	875 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	IL33	O95760	270 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PNP	P00491	289 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	OPN1LW	P04000	364 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ERCC1	P07992	297 aa	Predicted RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PCNA	P12004	261 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	MAGEA3	P43357	314 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PPOX	P50336	477 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF83	P51522	516 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	PGGT1B	P53609	377 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms