RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 CCDC65Q8IXS2 484 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 LINC01561Q8N1V8 128 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 CADM2Q8N3J6 435 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 KIR3DL3Q8N743 410 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 ATP6V0D2Q8N8Y2 350 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 C17orf47Q8NEP4 570 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 ADAMTS16Q8TE57 1224 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 BADQ92934 168 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 NPY6RQ99463 290 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SLC35A5Q9BS91 424 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 NIPSNAP3BQ9BS92 247 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 PARD6BQ9BYG5 372 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 DDX19AQ9NUU7 478 aaKnown RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 WRAP73Q9P2S5 460 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 L3MBTL1Q9Y468 752 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TIMM10BQ9Y5J6 103 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 NPTNQ9Y639 398 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 CLASP1Q7Z460 1538 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 UNC13AQ9UPW8 1703 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 MAP3K5Q99683 1374 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 FHOD3Q2V2M9 1422 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 ERICH2A1L162 156 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 ARHGEF35A5YM69 484 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 OR52A4PA6NMU1 304 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SNTNA6NMZ2 147 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PP2D1A8MPX8 630 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 A8MX80 341 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 LIN7AO14910 233 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 MED7O43513 233 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 NOL4O94818 638 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CLDN9O95484 217 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 AP2A1O95782 977 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 TSPAN12O95859 305 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PGAM2P15259 253 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 MMP11P24347 488 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 GCAP28676 217 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 NMT1P30419 496 aaKnown RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CD80P33681 288 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 EPHX2P34913 555 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 XCR1P46094 333 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 IST1P53990 364 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 KRTAP12-2P59991 146 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SEC61GP60059 68 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CD47Q08722 323 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CUL2Q13617 745 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SLC25A52Q3SY17 297 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 FAM120AOSQ5T036 256 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PRAMEF5Q5TYX0 476 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PRAMEF6Q5VXH4 476 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 ATL3Q6DD88 541 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 ZNF343Q6P1L6 599 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 C2orf66Q6UXQ4 117 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PLA2G4DQ86XP0 818 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 MFSD9Q8NBP5 474 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 FAM83FQ8NEG4 500 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 OR9K2Q8NGE7 335 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 OR2L2Q8NH16 312 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 FAM81AQ8TBF8 368 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PPP1R14BQ96C90 147 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 MS4A14Q96JA4 679 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CNOT6LQ96LI5 555 aaKnown RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 ZNF396Q96N95 335 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CLCC1Q96S66 551 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 CITED1Q99966 193 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SOSTQ9BQB4 213 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 APOL2Q9BQE5 337 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 RAB34Q9BZG1 259 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 METTL7AQ9H8H3 244 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 BFARQ9NZS9 450 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 DHRS4-AS1Q9P1J3 65 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PRPF19Q9UMS4 504 aaKnown RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 COPS3Q9UNS2 423 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SCML2Q9UQR0 700 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 POLDIP2Q9Y2S7 368 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 MEMO1Q9Y316 297 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 AK6Q9Y3D8 172 aaKnown RBP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 PPIAL4AQ9Y536 164 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 AQRO60306 1485 aaKnown RBP eCLIP3.38□□□□□ -1.87
PRPF39-210ENST00000556718 SAMD9Q5K651 1589 aa3.38□□□□□ -1.87
PRPF39-210ENST00000556718 HECW1Q76N89 1606 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 RTEL1-TNFRSF6BF6WH68 1400 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 A0A1B0GVL5 298 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 GOLGA8KD6RF30 607 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 SAP18O00422 153 aaKnown RBP3.37□□□□□ -1.87
PRPF39-210ENST00000556718 GPAA1O43292 621 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 HCN1O60741 890 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 E2F6O75461 281 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 ECI2O75521 394 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 CABYRO75952 493 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 DIRAS1O95057 198 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 NDUFB10O96000 172 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 IGHG3P01860 377 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 CYP2B6P20813 491 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 HMGB2P26583 209 aaKnown RBP3.37□□□□□ -1.87
PRPF39-210ENST00000556718 GNA11P29992 359 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 FGF9P31371 208 aaPredicted RBP3.37□□□□□ -1.87
PRPF39-210ENST00000556718 UGT1A5P35504 534 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 CSRP3P50461 194 aa3.37□□□□□ -1.87
PRPF39-210ENST00000556718 SUCLG1P53597 346 aaKnown RBP3.37□□□□□ -1.87
PRPF39-210ENST00000556718 MRPS11P82912 194 aaKnown RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms